====== OSX software (2013.07.17) ======

Here is a list of installed software in OSX mountain lion machine.\\
I leave this as a memo, mostly for myself. 

  * google chrome
  * chrome app
    * simplenote
    * evernote
    * dropbox
    * google japanese input
    * google calender
    * google tasks
    * diigo
    * white spaces
  * Google Notifier
    * For setting gmail as default mail client.
  * DropBox, desktop
  * Evernote, desktop
  * [[http://www.apple.com/downloads/dashboard/status/istatpro.html|istat pro]] (dashboard gadget)
  * [[http://macitbetter.com/BetterZip-Quick-Look-Generator/|BetterZipQL]]
    * This allows quick view (command-space) to automatically show ZIP contents 
  * Xcode
    * launch xcode once, then agree to the licensing
    * [[http://developer.apple.com/library/ios/#documentation/DeveloperTools/Conceptual/WhatsNewXcode/Articles/xcode_4_3.html|from preference, download and install command line tools (151 Mb)]]
  * [[http://www.moncefbelyamani.com/how-to-install-xcode-homebrew-git-rvm-ruby-on-mac/|Homebrew]]: 
    * install Git
    * add /user/local path to the .bash_profile
    * install python (2.7.3)
      * followed instruction [[http://www.thisisthegreenroom.com/2011/installing-python-numpy-scipy-matplotlib-and-ipython-on-lion/|here]] 
      * then with python pip, install numpy, scipy, matplotlib
      * IPython ([[http://d.hatena.ne.jp/sesejun/20110828/p1|instruction]])
        * brew install pyqt 
    * macvim
        * brew install macvim --override-system-vim
        * [[http://superuser.com/questions/334252/the-best-way-to-make-macvims-vim-console-not-mvim-the-default-instead-of-mac|instruction]]
    * maven
    * [[http://www.jython.org/|jython]]
      * ln -sf ../Cellar/jython/2.5.3/libexec/jython /usr/local/bin/jython
        * this is required for interactive shell. 
      * M2_PATH=~/.m2/repository \\ JYTHONPATH=`find $M2_PATH -name "*.jar" | tr "\\n" ":"` \\ export JYTHONPATH
    * [[http://www.scala-lang.org/|scala]]
      * sbt
    * brew linkapps
    * R
      * brew install R
        * sudo mv /Library/Frameworks/R.framework /Library/Frameworks/native_R.framework
        * sudo ln -s "/usr/local/Cellar/r/2.15.1/R.framework" /Library/Frameworks
        * defaults write org.R-project.R force.LANG en_US.UTF-8
    * ffmpeg
    * wget
    * openCV
      * brew install opencv
    * bash-completion
    * ctags
      * ln -s ~/<>/config/dotfiles/ctags ~/.ctags
    * newsbeuter
  * [[http://xquartz.macosforge.org/trac/wiki|XQuarz]]
  * [[http://www.iterm2.com/#/section/home|iTerm2]]
    * alternative of Terminal.app, more functionalities.
    * colorscheme [[https://gist.github.com/1015503|Solarized HIgh-Contrast]]
  * Eclipse
    * IDE, I use this for Java coding and latex editing. 
    * plugins
      * (vwrapper http://vrapper.sourceforge.net/home/)
      * (texlipse http://texlipse.sourceforge.net/)
      * pydev http://pydev.org/download.html
  * RStudio (linked to homebrew R)
    * IDE for R 
    * http://rstudio.org/
  * Fiji & ImageJ
  * Tex related ([[http://toggtc.hatenablog.com/entry/2012/02/20/230500|instructions]])
    * http://www.tug.org/mactex/
    * brew install ghostscript
    * brew install imagemagick
    * MacTeX.pkg  > double click, in "customoize" select only text live 2012 and GUI package
    * ln -s /usr/local/Cellar/r/3.0.1/R.framework/Versions/3.0/Resources/share/texmf/tex/latex ~/Library/texmf/tex/
      * this is to link sweave style file to tex.  
  * Mendeley Desktop
    * http://www.mendeley.com/
    * sync reference pdf and database via dropbox
      * [[http://www.michelepasin.org/blog/2012/08/07/using-mendeley-and-dropbox-to-sync-your-pdf-library-across-computers/|instructions]] 
        * ~/Library/Application Support>cp -r Mendeley\ Desktop ~/Dropbox/Mendeley/db/
        * ~/Library/Application Support>mv Mendeley\ Desktop _backup_Mendeley\ Desktop
        * ln -s ~/Dropbox/Mendeley/db/Mendeley\ Desktop
  * [[http://skim-app.sourceforge.net/|skim]]
    * PDF viewer, that could be in sync with texlipse (tex editor) 
  * [[http://www.videolan.org/vlc/index.html|VLC]]
    * Universal video viewer.
    * addons
      * [[http://addons.videolan.org/content/show.php/TuneIn+Radio?content=152788|TuneIn]], an internet radio tuner.   
  * [[http://johnmacfarlane.net/pandoc/|pandoc]]
    * swiss army knife for document conversion.  
  * [[http://freemacsoft.net/|AppCleaner]]
    * osx application uninstaller 
  * [[http://www.sophos.com/en-us/products/free-tools/sophos-antivirus-for-mac-home-edition.aspx|Sophos Anti-Virus]]
  * [[http://cyberduck.ch/|CyberDuck]]
    * SFTP. I sometime use this for transfering many files across servers 
  * Copy File Path
    * customize a Finder service,, that adds a shortcut key (command-shift-c) to copy full path into clipboard.
    * [[http://www.macyourself.com/2011/12/31/copy-file-or-folder-path-to-the-clipboard-in-mac-os-x-lion/|Instruction]]
  * LibreOffice
  * Skype 
  * Fonts
    * [[http://levien.com/type/myfonts/inconsolata.html|Inconsolata]]
    * brew install fontforge    
      * generate ricty font
        * [[http://www.itayan.com/2012/05/ricty_font_mac-os-x-lion/|instruction]]
  * IgorPro (Wavemetrics, not free)
  * [[http://mouapp.com/|Mou]]
  * Parallel (not free)
    * Windows7 (not free)
    * Chrome OS 
  * MS office standard (not free) + endnote (not free)
  * Adobe CS package (not free)
  * pending: some adjustments needed  needed 
    * [[http://www.iteleportmobile.com/support/wake|wake-on-LAN]]