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#Workshop: Basics of Bioimage Analysis using ImageJ 

## Instructor

[Kota Miura](http://wiki.cmci.info/mainpages/profile) (Ph.D., Bioimage Analyst) 

email: kotapub@gmail.com  
URL: http://wiki.cmci.info 

## Organizer

Wing-Kee Lee, B.Sc., Ph.D.  
Assistant Professor  
Institute for Physiology, Pathophysiology & Toxicology  
Department of Medicine, Faculty of Health  
University of Witten/Herdecke  

## Place and Time

Place: FEZ (großer Saal), Alfred-Herrhausen-Straße 50, 58455 Witten  
Date & Time: September 24th (10:00-18:00) & 25th (9:00-17:00), 2020  

## Preparation

Slides will be provided to you after the workshop. 

Please install Fiji and plugins in your machine. Instructions are written in the page below. 
 
  - [Basic Course Preparations](http://wiki.cmci.info/mainpages/courses/basiccourse_preparation)

## Schedule

### Day 1: 24 September (Thu), 2020


| Time          | Topic                                            |
| ------------- | ------------------------------------------------ |
| 10:00 - 11:00 | Introduction                                     |
| 11:00 - 11:30 | COFFEE BREAK                                     |
| 11:30 - 12:30 | From Images to Numbers                           |
| 12:30 - 13:30 | LUNCH BREAK                                      |
| 13:30 - 15:30 | From Numbers to Images                           |
|               | Multi-Dimensional Data                           |
| 15:30 - 16:00 | COFFEE BREAK                                     |
| 16:00 - 18:00 | Region of Interest and Segmentation              |
|               | Pre- & Post-processing for a better segmentation |
|               | How filters work, Usage of Filters               |

### Day 2: 25 September (Fri), 2020

| Time          | Topic                                              |
| ------------- | -------------------------------------------------- |
| 09:00 - 10:00 | Measurements: Counting and Locating Dots           |
| 10:00 - 10:30 | COFFEE BREAK                                       |
| 10:30 - 12:30 | Measurements: Lengths                              |
|               | Measurements: Area                                 |
|               | Measurements: Volume                               |
| 12:30 - 13:30 | LUNCH BREAK                                        |
| 13:30 - 15:00 | Batch Processing                                   |
|               | Measuring Intensity Changes                        |
| 15:00 - 15:30 | COFFEE BREAK                                       |
| 15:30 - 16:30 | Measuring Position Changes: Tracking Manually      |
|               | Measuring Position Changes: Tracking Automatically |
| 16:30 - 17:00 | Answering to questions posted before the  workshop |


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