====== Video Links ======

===== ImageJ Tutorials =====

==== ImageJ installation in Windows (2 min 30 sec) ====

{{http://www.youtube.com/v/QvN82ZB4rGA?.swf?600x400}}


==== Tutorial 01 Installing and Basics of ImageJ (46 min) ====

{{http://www.youtube.com/v/_zgvo6GBdX8?.swf?600x400}}
==== ImageJ tutorial (71 min) ====

{{http://www.youtube.com/v/KoqpCsha-UU?.swf?600x400}}


==== Optimizing epifluorescence images (7min 40sec) ====

{{http://www.youtube.com/v/tZaIXM0NzIY?.swf?600x400}}
==== Particle Counting (7 min) ====

  - Showing how to use [Analyze > Analyze Prticles...]

{{http://www.youtube.com/v/js9ECPuoOwA?.swf?600x400}}
==== Cell Area Measurement ====

- Segment cells using automatic thresholding, select cells using "magic wand" tool, store ROIs in roi manager. 

{{http://www.youtube.com/v/WxTu2fn7QxY?.swf?600x400}}

==== Measure Intensity Changes over Time ====

  - This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].

{{http://www.youtube.com/v/Gv7sJ7L2rRY?.swf?600x400}}

==== Automatic Nucleus Counting (ITCN Plugin) ====

  - Uses [[http://rsbweb.nih.gov/ij/plugins/itcn.html|ITCN (Image-based Tool for Counting Nuclei)]]

{{http://www.youtube.com/v/PqHFsmS1_JY?.swf?600x400}}

==== Track and analyze Brownian Motions (MTrack2 plugin) ====

  - Uses plugin "MTrack2" by Nico, and Excel to analyze tracks. 

{{http://www.youtube.com/v/MDIVDAIkdME?.swf?600x400}}

==== Visualizing 3D (3Dviewer plugin) ====

Videos showing how to use [[http://132.187.25.13/home/?category=Download&page=Viewer3D|3D viewer]], a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.  

  - part 1

{{http://www.youtube.com/v/cD3Hc3NYkaU?.swf?600x400}}

  - part 2

{{http://www.youtube.com/v/GqG_RcK3kYg?.swf?600x400}}