Bioimage Data Analysis Workflows ‒ Advanced Components and Methods
Since 2022, the third book from the NEUBIAS network has been available, with open access to all chapters. Enjoy!
Contents:
- Introduction (Nataša Sladoje and Kota Miura)
- Batch Processing Methods in ImageJ (Anna Klemm and Kota Miura)
- Python: Data Handling, Analysis and Plotting (Arianne Bercowsky Rama)
- Building a Bioimage Analysis Workflow Using Deep Learning (Estibaliz Gómez-de-Mariscal, Daniel Franco- Barranco, Arrate Muñoz-Barrutia and Ignacio Arganda-Carreras)
- GPU-Accelerating ImageJ Macro Image Processing Workflows Using CLIJ (Daniela Vorkel and Robert Haase)
- How to Do the Deconstruction of Bioimage Analysis Workflows: A Case Study with SurfCut. (Marion Louveaux and Stéphane Verger)
- i.2.i. with the (Fruit) Fly: Quantifying Position Effect Variegation in Drosophila Melanogaster (Bertrand Cinquin, Joyce Y. Kao and Mark L. Siegal)
- A MATLAB Pipeline for Spatiotemporal Quantification of Monolayer Cell Migration (Yishaia Zabary and Assaf Zaritsky)