The CMCI Image Analysis Seminar aims at promoting interaction among image analysts in EMBL and the exchanges of information among them. To join, please send a mail to Kota (miura@embl.de).
For older seminars from 2006 to 2013, please refer to this page.
Four types of talk, choose one for your talk.
| Date | Talk Title | First Name | Last Name | unit | moderator |
|---|---|---|---|---|---|
| 6/18/2014 | kick-off / Evaluation Methods for Segmentation | Kota | Miura | EMBL Centres | |
| 6/18/2014 | A semi-automated image processing pipeline for measurement of chromosome loci distance over time | Christoph | Schiklenk | CBB | |
| 7/2/2014 | Analysis of the cell lineage of Platynereis brain | Pavel | Vopalensky | DB | |
| 7/2/2014 | Classification of images of mixed communities | Luis Pedro | Coelho | SCB | |
| 7/23/2014 | tentative title: How to determinine the molecular architecture of the exocyst complex by light microscopy | Andrea | Picco | CBB | |
| 7/23/2014 | TBA | Volker | Hilsenstein | Core Facility | |
| 9/3/2014 | Quantifying COPII coat turnover at ER-exit sites with automated FRAP | Aliaksandr | Halavatyi | CBB | |
| 9/3/2014 | Contraction waves at cell division - measuring cell shape changes | Johanna | Bischof | CBB | |
| 9/24/2014 | Chromosome tracking in starfish oocyte | Mariia | Burdyniuk | CBB | |
| 9/24/2014 | Towards an in silico model of the dividing human cell | Julius | Hossain | CBB | |
| 10/15/2014 | Dealing with SPIM data: multi-view registration and fusion methods | Balázs | Bálint | CBB | |
| 10/15/2014 | Quantification of cell shape dynamics and optogenetic activation efficiency to study a light-perturbed morphogenetic process | Joe | Barry | GB | |
| 11/12/2014 | Complex experiments made easy: how to automate your microscopy pipeline | Antonio | Politi | CBB | Christof Schiklenk |
| 11/12/2014 | Role of cytoskeleton in morphological changes of blood platelets. | Aastha | Mathur | CBB | Christof Schiklenk |
| 11/26/2014 | Unsupervised modelling of ""Mitotic Standard Time"" for automatic analysis of human mitotic protein spatio-temporal distribution dynamics during cell division" | Yin | Cai | CBB | Antonio Politi |
| 11/26/2014 | gitter: a robust and accurate method for quantification of colony sizes from plate images | Omar | Wagih | EBI | Antonio Politi |
| 12/17/2014 | Considerations on Quantitative Intensity Measurements | Christian | Tischer | Core Facility | Kota Miura |
| 12/17/2014 | A Semi-Automatic Quantification method for observing the heterogeneity in re-replication patterns in fission yeast | Nickolaos | Giakoumakis | visitor | Kota Miura |
| 1/14/2015 | How to measure distances between centrioles and membranes? | Joana | Pinto | CBB | Luis Pedro Coelho |
| 1/14/2015 | Bioimage Information Index: Why and How | Kota | Miura | CBB | Luis Pedro Coelho |
| 2/11/2015 | Techniques of the velocimetry | Ritsuya | Niwayama | DB | Christof Schiklenk |
| 2/11/2015 | 2D tracking routine for following densely spaced objects the tracking and the segmentation in 3D | Wani | Xiang | CBB | Christof Schiklenk |
| 2/25/2015 | TBA | Nike | Walther | CBB | Antonio Politi |
| 2/25/2015 | From Matlab and ImageJ to Python - How and why I made the transition and how good or bad is python for image processing (discussion | Petr | Strnad | CBB | Antonio Politi |
| 3/18/2015 | Individuals in the collective: towards the quantification of single cell shape changes during morphogenetic movement coordination | Emiliano | Izquierdo | DB | Kota Miura |
| 3/18/2015 | 3D superresolution microscopy by supercritical angle detection | Joran | Deschamps | CBB | Kota Miura |
| 4/15/2015 | FluoQ – an ImageJ macro for rapid analysis of multiparameter fluorescence imaging data | Frank | Stein | CBB | Luis Pedro Coelho |
| 4/15/2015 | Grid pattern detection during a CLEM workflow (and little bit of Knime). | José Miguel | Serra Lleti | CBB | Luis Pedro Coelho |
| 4/29/2015 | Sorting and Imaging of Fluorescent Cells Encapsulated in Microfluidics Droplets | Hongxing | Hu | GB | Christof Schiklenk |
| 4/29/2015 | Population Image Analysis | Leopold | Parts | GB | Christof Schiklenk |
| 5/20/2015 | Iris: expanding the palette of microbial phenotypic readouts | George | Kritikos | GB | Aliaksandr Halavatyi |
| 5/27/2015 | Single-cell resolution atlas of gene expression for comparative Evo-Devo a zebrafish light sheet microscope. | Hernando Martinez | Vergara | DB | Aliaksandr Halavatyi |
| 6/10/2015 | Image analysis for zSPIM | Nils | Norin | CBB | Kota Miura | |
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