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--- blogtng:2010-05-04:photobleaching_correction_3d_time_series [2010/05/04 11:24] – kota
+++ blogtng:2010-05-04:photobleaching_correction_3d_time_series [2016/05/24 12:46] (current) – external edit 127.0.0.1
@@ Line 27: / Line 27: @@
 ----
 here is the "ratio" version:
 <code>
@@ Line 55: / Line 56: @@
 		for(j=0; j<slices; j++){
 			curframe = i*slices + j+1;
-			s{{:documents:figures2010:bc_montage_before.jpg|}}etSlice(curframe);
+			setSlice(curframe);
 			//print("frame"+curframe + " factor" + tIntA[i]);
 			op = "value="+tIntA[i]+" slice";
@@ Line 65: / Line 66: @@
 </code>
+----
+**Before Correction** (each row is a time point, with 8 z-slices)\\
+{{:documents:figures2010:bc_montage_before.jpg?350| Before each row is a time point}}
+Average intensity along stack slices. 5 peaks corresponds to 5 time points.
+{{:documents:figures2010:bc_intensitychange_before.jpg?350|Before}}
+----
+**After Correction**\\
+{{:documents:figures2010:bc_montage_after.jpg?350|After}}
+{{:documents:figures2010:bc_intensitychange_after.jpg?350|After}}
+----
+----
-[{{:documents:figures2010:bc_montage_before.jpg?350| Before each row is a time point}}]
-[{{:documents:figures2010:bc_intensitychange_before.jpg?350|Before}}]
-After:
-[{{:documents:figures2010:bc_montage_after.jpg?350|After}}]
-[{{:documents:figures2010:bc_intensitychange_after.jpg?350|After}}]