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EMBL BioImage Data Analysis



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Timeline of @cmci_

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RT @xuepan3: @palankarr @manorlaboratory Hi Raghva, We compared the results generated by IMARIS and Trackmate in ImageJ. There are some min…
About 2 days, 13 hours ago by: Kota Miura (@cmci_)

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RT @albertcardona: Plotting from your @FijiSc #python scripts, using ImageJ's internal plotting library, and with @jfreechart for prettier…
About 2 days, 14 hours ago by: Kota Miura (@cmci_)

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RT @CefapConfocal: If you struggle with image analysis, check our webpage with few ImageJ and Zen tutorials: ps .:…
About 3 days, 11 hours ago by: Kota Miura (@cmci_)

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RT @iefforts: The cells were visualized on a Nikon AR1 or Leica SP8 confocal microscope. At least 30 cells were analysed for each condition…
About 3 days, 11 hours ago by: Kota Miura (@cmci_)

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RT @MarJungle: BigStitcher on ImageJ for 3D model reconstructions. A beta-version is available via the Fiji Updater. I am going to try this…
About 3 days, 11 hours ago by: Kota Miura (@cmci_)

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RT @ARVOtvst: New in the August issue: 25-MHz ultrasound biomicroscopy combined with #ImageJ software can be used to evaluate the opacity d…
About 3 days, 11 hours ago by: Kota Miura (@cmci_)
Algorithm FRAP Fiji ImageJ ImageJ Plugin ImageJ Plugin 3Dviewer Imaris Java Javascript Python R added 201904 Freiburg bias blog dokuwiki fiji google imagej java libraries matlab meetings neubias news papers python references software webadmin

CMCI weblog

Previous Headline news

just to keep some memo on previous news:


- Peter Serocka's talk "Visual Analysis Tools for Multivariate Image Data" on Jan 29th, 2010, from 11am at the small operon
 (18. Jan. 2010).

- CMCI symposium 2nd round, a series of talks by EMBL researchers on Sept 25th, 2009
 (29. Aug. 09).

- CMCI symposium, a series of talks by EMBL researchers on June 30th, 2009
 (29. june. 09).

- FRAPcalc updated and now Ver.9g.
 (11. Dec. 08).

- “Running 3D-Projector” now downladable (29. Aug. 2008).

- “Spindle FRAP/FLIP analyzer” now downloadable (12 Aug 2008).

- CMCI seminar: July 31st (Thu) 2008, 15:00- 16:00 @small operon

 Anke Meyer-Baese (Florida State University) will talk about “Pattern Analysis and Visualization in Computer-Aided Diagnosis:Cross-Fertilization between Biomedical Imaging and Engineering” (–> Abstract)

- “Time Series Color Coder” added in download section, and FrapCalc was updated to ver.9e (24. Jul. 08)

- CMCI seminar: July 25th (Fri) 2008, 11:00- 12:00 @ large operon  by Robert Murphy (Carnegie Mellon University) –> “Automated Determination and Modeling of Subcellular Location for Systems Biology” (–> Murphy lab website)

- Next CMCI seminar: Jan 21 (Mon) 2008 11:00-12:00 @ small operon
Christian Tischer (The Institute for Atomic and Molecular Physics, Amsterdam) will talk about measurement of microtubule dynamics using his automated MT tracking system.  Title: “Spatial Regulation of Microtubule Dynamics in Fission Yeast” For more details, see his Abstract.

- CMCI seminar on oct. 26 (Fri) 14:00
speakers: Jerome Solon and Kota Miura

- FRAPcalc updated and now Ver.9a. Leica .cvs format is loadable now (27. Aug. 07).

- CMCI seminar on Aug. 22 by Shigenori Nonaka (Dept. Imaging Science, NIBB Japan) about motor protein and left-right asymmetry (details).

- added “DeltaVision Format Header Reader” in the download section (13 June  2007)
- Young-Tae Chang (Dept. Chemisty, NYU) will give a talk titled “Colorful Chemical Genetics” on June 15th. More details –> seminar page (5.June.2007)

- added “File Converter - Perkin Elmer Tiff Series to 3D stacks” in the download section (5.June.2007).
- Emre Yaksi (Dept. Biomedical Optics, MPI-Medical Research) will give a talk “Imaging odor responses in zebrafish forebrain by using two-photon microscopy” on 25th of May. (16. 04.07) check his paper –> (Link)

- Prof. Ralf Schnabel (Technical University of Braunschweig) will present a softwar SIMIBiocell, a tool for automated analysis of cell lineages (details).

- Download page initiated (updated FRAP_calc and documentation) (28.Mar.07)

- ImageJ Plugin Programming Course Slide Show in this page (1.03.07)

- ImageJ Macro Programming course Slide Show in this page (20.02.07)

- CMCI Mini-Symposium: Progress of Mathematical Morphology in Biology on Feb. 6th. Members from Centre of Mathematical Morphology @ Ecole des Mines de Paris will present their works.  Talks will be broadcasted and shown in the EBI also.

- Slide show of Image Processing / Analysis internal course is available in this page. (need Flash player plugin installed)

- New Tracking ImageJ PlugIn: Particle Tracker (27.11.06)
- New Tracking ImageJ PlugIn: MTrackJ (27.11.06)


Renovation of CMCI webpage

Old CMCI is now moved to new wiki format (dokuwiki), to make the editing more efficient and also to involve more people editing and exchange information.

Previous site could be found below:

Most of contents were migrated from old to new as it was.

— changed main.php to add logo at the top right corner (Manuela's suggestion, thanks)

entry generator

Weblog Archive

blogtng/blogtop.txt · Last modified: 2016/05/24 05:46 (external edit)