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Timeline of @cmci_

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@MarionLouveaux I can't find Astha's twitter account, but she is here already in twitter. She's got the poster priz… https://t.co/mZuB80qRJP
About 55 mins, 14 secs ago by: Kota Miura (@cmci_)

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one of the discussion topics with @MarionLouveaux and Astha was "how to deal with people asking 'I want to find dif… https://t.co/ME9YhMp9hL
About 56 mins, 29 secs ago by: Kota Miura (@cmci_)

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Ah wrongly mentioned. @ilastik_team
About 2 hours, 23 mins ago by: Kota Miura (@cmci_)

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... a pic kindly taken by Fred Hamprecht who just by chance passed by. Thanks Fred! @ilastik
About 2 hours, 26 mins ago by: Kota Miura (@cmci_)

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RT @Biosdfp: Amazing metal-replica electron microscopy of cortical actin in membrane blebs from the Svitkina and Alexandrova labs in latest…
About 21 hours, 22 mins ago by: Kota Miura (@cmci_)

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RT @PLOSBiology: EmbryoPhenomics - an #OpenSource platform for high-throughput #phenome screening of aquatic #embryos. Proof-of-principle c…
About 21 hours, 23 mins ago by: Kota Miura (@cmci_)
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CMCI weblog

Python <- (ImageJ, R)

Setup and a simple example for parallel use of ImageJ and R from Python (Jython) is documented. See Here.

R and ImageJ

R is a statistical computing package, and ImageJ is image processing and analysis software (actually, R could do image processing and ImageJ could also do statistics, but not usually used and tools are limited). Ideal work is then to somehow combine these two.

Such attempts has not been rare. Several attempts has been made. Project such as RImageJ is one of such.

http://romainfrancois.blog.free.fr/index.php?category/R-package/RImageJ

Recently, an integrated interface is available.

Bio7
http://129.70.40.49/modelling/?page_id=75

It seems that this project is mostly oriented towards ecology analysis, but the basic concept is to ease passing data between R and ImageJ. There many instructions on example usage of the software.

Java - R JRI - Java/R Interface http://www.rforge.net/JRI/

Matlab - R

very well documentation comparing Matlab and R.

http://www.math.umaine.edu/~hiebeler/comp/matlabR.html

Linked PDF contains huge number of functions in R equivalent to Matlab functions. Some useful discussions on difference between R and matlab could be found in

http://stackoverflow.com/questions/1738087/what-can-matlab-do-that-r-cannot-do

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blogtng/blogtop.txt · Last modified: 2016/05/24 05:46 (external edit)