documents:100922imagej_cluster
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| documents:100922imagej_cluster [2010/10/05 10:22] – kota | documents:100922imagej_cluster [2010/10/05 10:28] – kota | ||
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| ===== Automated Script (Only from within EMBL network) ===== | ===== Automated Script (Only from within EMBL network) ===== | ||
| - | Automated Script is available in ALMF server (clust5fullp.sh). With this script, you only need to invoke the script with two arguments. | + | Automated Script is available in the ALMF server (clust5fullp.sh). With this script, you only need to invoke the script with two arguments. |
| * arg[0]: full path to the directory containing image/stack files | * arg[0]: full path to the directory containing image/stack files | ||
| * arg[1]: name of the imageJ macro you want to apply. | * arg[1]: name of the imageJ macro you want to apply. | ||
| Line 177: | Line 177: | ||
| </ | </ | ||
| - | This script will create two new folders in the directory same as where the image directory is (*_job and *_proc). Processed images or stacks will be saved under *_proc. job reports will appear in your current directory where you executed the command. | + | This script will create two new folders in the directory same as where the image directory is (*_job and *_proc). Processed images or stacks will be saved under *_proc. |
| + | Besides, so-called | ||
| - | The script could be viwed in the link below: [[http:// | + | The script could be viewed |
| ===== Example Scripts ===== | ===== Example Scripts ===== | ||
documents/100922imagej_cluster.txt · Last modified: 2016/05/24 12:46 by 127.0.0.1