documents:100922imagej_cluster
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| Both sides previous revisionPrevious revision | Next revisionBoth sides next revision | ||
| documents:100922imagej_cluster [2010/10/05 10:28] – kota | documents:100922imagej_cluster [2010/11/16 09:00] – kota | ||
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| Line 7: | Line 7: | ||
| * headless.jar | * headless.jar | ||
| * This .jar file manages to work with ImageJ headlessly. | * This .jar file manages to work with ImageJ headlessly. | ||
| - | * download headless.jar file from [[http:// | + | * accessible by / |
| + | * Otherwise, | ||
| * blobs.tif | * blobs.tif | ||
| - | * You could download this by Normal ImageJ (with-head, or GUI). [File -> Open Samples -> Blob]. Save it in the current directory /home/miura/test | + | * You could download this by Normal ImageJ (with-head, or GUI). [File -> Open Samples -> Blob]. Save it in the current directory /home/<your username> |
| * headlesstest.ijm | * headlesstest.ijm | ||
| - | * You must created this ImageJ macro file and save it in the current directory. See below. | + | * You must write an ImageJ macro file and save it in the current directory. See below. |
| * testpbs.sh | * testpbs.sh | ||
| - | * You must created this ImageJ macro file and save it in the current directory. See below. | + | * You must write a shell script |
| **Write an ImageJ macro** that does the actual processing. | **Write an ImageJ macro** that does the actual processing. | ||
| Line 33: | Line 34: | ||
| #PBS -N TestPBS | #PBS -N TestPBS | ||
| #PBS -l walltime=1: | #PBS -l walltime=1: | ||
| - | / | + | / |
| </ | </ | ||
| Some more explanation: | Some more explanation: | ||
documents/100922imagej_cluster.txt · Last modified: 2016/05/24 12:46 by 127.0.0.1