documents:101103imagej_cluster_short
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documents:101103imagej_cluster_short [2011/08/18 14:42] – kota | documents:101103imagej_cluster_short [2020/11/26 09:11] (current) – external edit 127.0.0.1 | ||
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====== Using Cluster (Quick Version) ====== | ====== Using Cluster (Quick Version) ====== | ||
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+ | **Note: This page is outdated (June 1, 2016)**. I will prepare a newer version. | ||
Since most of the scripts for cluster use is located under a specific directory in the ALMF server, I recommend you to add the path to your .tcshrc as below. | Since most of the scripts for cluster use is located under a specific directory in the ALMF server, I recommend you to add the path to your .tcshrc as below. | ||
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To process image file /a/b/c.tif with an ImageJ macro file /d/e/f.ijm, like above, but with cluster | To process image file /a/b/c.tif with an ImageJ macro file /d/e/f.ijm, like above, but with cluster | ||
- | <quote> | + | <blockquote> |
**sh qsubIJ /d/e/f.ijm / | **sh qsubIJ /d/e/f.ijm / | ||
- | </quote> | + | </blockquote> |
Job will be submitted to the cluster, and what should be the output from ImageJ will be saved as a text file in your ALMF home directory: | Job will be submitted to the cluster, and what should be the output from ImageJ will be saved as a text file in your ALMF home directory: |
documents/101103imagej_cluster_short.1313678557.txt.gz · Last modified: 2016/05/24 12:46 (external edit)