documents:101213imagej_silent
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documents:101213imagej_silent [2010/12/13 13:52] – created kota | documents:101213imagej_silent [2016/05/24 12:46] (current) – external edit 127.0.0.1 | ||
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====== ImageJ with fake X server ====== | ====== ImageJ with fake X server ====== | ||
- | Ruben found a way to setup fake X-server in server side, that one could use ImageJ silently from client. In a sense, ImageJ head is existing so it's not really headless but it might be even less problem than using headless.jar since the silent mode described below could handle awt instances within | + | Ruben found a way to setup fake X-server in server side, that one could use ImageJ silently from client. In a sense, ImageJ head is existing so it's not really headless but it might be even less problem than using headless.jar since the silent mode described below could handle awt instances within |
Startup your ssh client (putty or so) and connect to a server. Foe example | Startup your ssh client (putty or so) and connect to a server. Foe example | ||
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>setenv DISPLAY :1 | >setenv DISPLAY :1 | ||
- | >Xvfp :1 & | + | >Xvfb :1 & |
(error, but return) | (error, but return) | ||
then invoke ij such as | then invoke ij such as | ||
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with this, nothing happens but imagej is running remotely. You could then pass macro or scripts by adding argument. | with this, nothing happens but imagej is running remotely. You could then pass macro or scripts by adding argument. | ||
- | after finishing the process, terminate the Xvfp by | + | after finishing the process, terminate the Xvfb by |
>fg | >fg | ||
to bring the X forward, | to bring the X forward, | ||
then kill the session if you are done. | then kill the session if you are done. | ||
+ | |||
+ | An example command could be | ||
+ | < | ||
+ | fiji -macro whatevermacro.ijm | ||
+ | </ | ||
+ | |||
documents/101213imagej_silent.1292248349.txt.gz · Last modified: 2016/05/24 12:46 (external edit)