documents:110822jsip_cooking:javascript_imagej_cookbook
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documents:110822jsip_cooking:javascript_imagej_cookbook [2016/05/25 10:07] – kota | documents:110822jsip_cooking:javascript_imagej_cookbook [2020/11/26 08:24] (current) – kota | ||
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==== Loading CSV file (data table) ==== | ==== Loading CSV file (data table) ==== | ||
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==== Saving CSV file (data table) ==== | ==== Saving CSV file (data table) ==== | ||
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==== Batch Trainable Segmentation using Trained Data ==== | ==== Batch Trainable Segmentation using Trained Data ==== | ||
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Another version without using the plugin above. | Another version without using the plugin above. | ||
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%gist(1663061)% | %gist(1663061)% | ||
+ | |||
+ | https:// | ||
+ | < | ||
+ | importClass(Packages.ij3d.image3d.IntImage3D); | ||
+ | imp=IJ.getImage(); | ||
+ | ima=new IntImage3D(imp.getStack()); | ||
+ | r=3; | ||
+ | ima2=ima.createLocalMaximaImage(r, | ||
+ | plus=new ImagePlus(" | ||
+ | plus.show(); | ||
+ | </ | ||
==== Transformation of 3D stack according to given landmark pairs ==== | ==== Transformation of 3D stack according to given landmark pairs ==== | ||
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==== 3D tracking of spots, and plotting of the resulted spots in a new Stack ==== | ==== 3D tracking of spots, and plotting of the resulted spots in a new Stack ==== | ||
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===== Math ===== | ===== Math ===== | ||
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==== Gaussian fitting of Intensity Profile ==== | ==== Gaussian fitting of Intensity Profile ==== | ||
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+ | [gist cmci/ | ||
==== Plotting Mesh shapes: an example with tubes ==== | ==== Plotting Mesh shapes: an example with tubes ==== |
documents/110822jsip_cooking/javascript_imagej_cookbook.1464170829.txt.gz · Last modified: 2016/05/25 10:07 by kota