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documents:120206pyip_cooking:python_imagej_cookbook

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documents:120206pyip_cooking:python_imagej_cookbook [2018/12/12 03:30] – [Python + ImageJ, Fiji Cookbook] kotadocuments:120206pyip_cooking:python_imagej_cookbook [2018/12/12 23:28] – [Python + ImageJ, Fiji Cookbook] kota
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 This page is like a cookbook: there are no details about how to do programming, but more centered on how to use Classes build in ImageJ and its plugins. This is because the style how each algorithm is implemented is not consistent (they are written by 1000 different people!) so it takes a while to figure out how to use them when we are writing a bioimage analysis workflow. Examples below show how they are actually used in Jython scripts, to save our time for reading the source code of each.  This page is like a cookbook: there are no details about how to do programming, but more centered on how to use Classes build in ImageJ and its plugins. This is because the style how each algorithm is implemented is not consistent (they are written by 1000 different people!) so it takes a while to figure out how to use them when we are writing a bioimage analysis workflow. Examples below show how they are actually used in Jython scripts, to save our time for reading the source code of each. 
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 +Other resources: 
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 +[[https://jython.readthedocs.io/en/latest/|The Jython book "The Definitive Guide to Jython"]]: it's saying that the book is a version from 2009, but the latest commit is in Oct. 2018. 
 ===== Jython Interpreter ===== ===== Jython Interpreter =====
 A way to run jython script from jython interpreter, interactively. A way to run jython script from jython interpreter, interactively.
documents/120206pyip_cooking/python_imagej_cookbook.txt · Last modified: 2022/10/16 07:12 by kota

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