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documents:120206pyip_cooking:python_imagej_cookbook [2018/12/12 15:28]
kota [Python + ImageJ, Fiji Cookbook]
documents:120206pyip_cooking:python_imagej_cookbook [2018/12/18 14:50] (current)
kota [Python + ImageJ, Fiji Cookbook]
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 For learning image processing using Fiji and Jython scripting, go to excellent tutorials written by Albert Cardona, such as [[https://​www.ini.uzh.ch/​~acardona/​fiji-tutorial/​ | here in his website]] or [[https://​imagej.net/​Jython_Scripting | here in ImageJ.net]]. The former is in a tutorial style so if you want to learn how to do scripting using Jython, that's the place where you go.  For learning image processing using Fiji and Jython scripting, go to excellent tutorials written by Albert Cardona, such as [[https://​www.ini.uzh.ch/​~acardona/​fiji-tutorial/​ | here in his website]] or [[https://​imagej.net/​Jython_Scripting | here in ImageJ.net]]. The former is in a tutorial style so if you want to learn how to do scripting using Jython, that's the place where you go. 
  
-This page is like a cookbook: there are no details about how to do programming,​ but more centered on how to use Classes ​build in ImageJ and its plugins. This is because the style how each algorithm is implemented is not consistent (they are written by 1000 different people!) so it takes a while to figure out how to use them when we are writing a bioimage analysis workflow. Examples below show how they are actually used in Jython scripts, to save our time for reading the source code of each. +This page is like a cookbook: there are no details about how to do programming,​ but more centered on how to use Classes ​built in ImageJ and its plugins. This is because the style how each algorithm is implemented is not consistent (they are written by 1000 different people!) so it takes a while to figure out how to use them when we are writing a bioimage analysis workflow. Examples below show how they are actually used in Jython scripts, to save our time for reading the source code of each. 
  
 Other resources: ​ Other resources: ​
documents/120206pyip_cooking/python_imagej_cookbook.1544657324.txt.gz ยท Last modified: 2018/12/12 15:28 by kota