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documents:140326jointcourse [2016/05/24 12:46] – external edit 127.0.0.1documents:140326jointcourse [2017/06/07 03:08] (current) – github username changed kota
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 https://bio-it.embl.de/joint-training https://bio-it.embl.de/joint-training
  
-https://github.com/cmci/HTManalysisCourse/blob/master/CentreCourseProtocol.md+https://github.com/miura/HTManalysisCourse/blob/master/CentreCourseProtocol.md
  
 <markdown> <markdown>
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  :check Display Results, Clear results, Exclude on Edges, Include Holes  :check Display Results, Clear results, Exclude on Edges, Include Holes
  
-q1, q3, offset calculation: Copy and paste <https://gist.github.com/cmci/9641262>+q1, q3, offset calculation: Copy and paste <https://gist.github.com/miura/9641262>
  
      Example results: 2926.0 3854.0 1392.0      Example results: 2926.0 3854.0 1392.0
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 Codes used in this interactive session assembled in a file and in  Codes used in this interactive session assembled in a file and in 
  
-<https://gist.github.com/cmci/9687511>+<https://gist.github.com/miura/9687511>
  
 ### File access ### File access
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 A script for processing single image dataset is: A script for processing single image dataset is:
  
-<https://gist.github.com/cmci/9765308>+<https://gist.github.com/miura/9765308>
  
 ```python ```python
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 ``` ```
-<https://gist.github.com/cmci/9644827>+<https://gist.github.com/miura/9644827>
  
  
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 We will not go over the details of full processing, but the pre-screening code is a good example of accessing multiple files and process images.  We will not go over the details of full processing, but the pre-screening code is a good example of accessing multiple files and process images. 
  
-<https://gist.github.com/cmci/9684453>+<https://gist.github.com/miura/9684453>
  
 Pre-screen results are saved under Pre-screen results are saved under
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 Assembling all the fragments as a single script, here is the final code to submit.  Assembling all the fragments as a single script, here is the final code to submit. 
  
-<https://github.com/cmci/HTManalysisCourse/blob/master/measTransportBatch3.py>+<https://github.com/miura/HTManalysisCourse/blob/master/measTransportBatch3.py>
  
 An important command that appears only here is 'sys.argv`, which holds the argument added in the command line. Try the following to see what is happening.  An important command that appears only here is 'sys.argv`, which holds the argument added in the command line. Try the following to see what is happening. 
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 Here is the code written by Clemens.  Here is the code written by Clemens. 
  
-<https://github.com/cmci/HTManalysisCourse/blob/master/fiji_script.sh>+<https://github.com/miura/HTManalysisCourse/blob/master/fiji_script.sh>
  
 ```sh ```sh
documents/140326jointcourse.txt · Last modified: 2017/06/07 03:08 by kota

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