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documents:140326jointcourse [2016/05/24 05:46]
127.0.0.1 external edit
documents:140326jointcourse [2017/06/06 20:08] (current)
kota github username changed
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 https://​bio-it.embl.de/​joint-training https://​bio-it.embl.de/​joint-training
  
-https://​github.com/​cmci/​HTManalysisCourse/​blob/​master/​CentreCourseProtocol.md+https://​github.com/​miura/​HTManalysisCourse/​blob/​master/​CentreCourseProtocol.md
  
 <​markdown>​ <​markdown>​
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  :check Display Results, Clear results, Exclude on Edges, Include Holes  :check Display Results, Clear results, Exclude on Edges, Include Holes
  
-q1, q3, offset calculation:​ Copy and paste <​https://​gist.github.com/​cmci/​9641262>​+q1, q3, offset calculation:​ Copy and paste <​https://​gist.github.com/​miura/​9641262>​
  
      ​Example results: 2926.0 3854.0 1392.0      ​Example results: 2926.0 3854.0 1392.0
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 Codes used in this interactive session assembled in a file and in  Codes used in this interactive session assembled in a file and in 
  
-<​https://​gist.github.com/​cmci/​9687511>​+<​https://​gist.github.com/​miura/​9687511>​
  
 ### File access ### File access
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 A script for processing single image dataset is: A script for processing single image dataset is:
  
-<​https://​gist.github.com/​cmci/​9765308>​+<​https://​gist.github.com/​miura/​9765308>​
  
 ```python ```python
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 ``` ```
-<​https://​gist.github.com/​cmci/​9644827>​+<​https://​gist.github.com/​miura/​9644827>​
  
  
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 We will not go over the details of full processing, but the pre-screening code is a good example of accessing multiple files and process images. ​ We will not go over the details of full processing, but the pre-screening code is a good example of accessing multiple files and process images. ​
  
-<​https://​gist.github.com/​cmci/​9684453>​+<​https://​gist.github.com/​miura/​9684453>​
  
 Pre-screen results are saved under Pre-screen results are saved under
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 Assembling all the fragments as a single script, here is the final code to submit. ​ Assembling all the fragments as a single script, here is the final code to submit. ​
  
-<​https://​github.com/​cmci/​HTManalysisCourse/​blob/​master/​measTransportBatch3.py>​+<​https://​github.com/​miura/​HTManalysisCourse/​blob/​master/​measTransportBatch3.py>​
  
 An important command that appears only here is '​sys.argv`,​ which holds the argument added in the command line. Try the following to see what is happening. ​ An important command that appears only here is '​sys.argv`,​ which holds the argument added in the command line. Try the following to see what is happening. ​
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 Here is the code written by Clemens. ​ Here is the code written by Clemens. ​
  
-<​https://​github.com/​cmci/​HTManalysisCourse/​blob/​master/​fiji_script.sh>​+<​https://​github.com/​miura/​HTManalysisCourse/​blob/​master/​fiji_script.sh>​
  
 ```sh ```sh
documents/140326jointcourse.txt ยท Last modified: 2017/06/06 20:08 by kota