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documents:201021ijmacrofragments [2020/11/26 07:01] kotadocuments:201021ijmacrofragments [2021/12/07 09:09] (current) kota
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 +
 ====== ImageJ Macro Fragments ====== ====== ImageJ Macro Fragments ======
  
Line 9: Line 10:
 print(th); print(th);
 </sxh> </sxh>
 +
 +===== Loading ROIs from a file in Internet =====
 +
 +shell command "curl" should be available in your local machine. [[https://help.ubidots.com/en/articles/2165289-learn-how-to-install-run-curl-on-windows-macosx-linux|See here for installation]]. 
 +
 +<sxh js>
 +run("Blobs (25K)");
 +path = getDirectory('imagej')+"RoiSet.zip";
 +print(path)
 +exec("curl", "-LJO", "https://github.com/mutterer/weird/raw/master/RoiSet.zip", "--output", path);
 +roiManager("Open",path);
 +roiManager("Show All");
 +File.delete(path);
 +</sxh>
 +
 +===== Getting Pixel Coordinates within a Polygon ROI =====
 +
 +<sxh js>
 +Roi.getContainedPoints(xps, yps); 
 +for(i=0; i<xps.length; i++) {
 + xpos = xps[i];
 + ypos = yps[i];
 + pixval = getPixel(xpos, ypos);
 + print("("+ xpos + ", " + ypos + ") ", pixval);
 +}
 +</sxh>
 +
  
 ===== Ways of getting the file basename ===== ===== Ways of getting the file basename =====
documents/201021ijmacrofragments.1606374079.txt.gz · Last modified: 2020/11/26 07:01 by kota

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