downloads:3dtrackviewer
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downloads:3dtrackviewer [2012/06/29 21:15] – kota | downloads:3dtrackviewer [2016/05/24 12:46] (current) – external edit 127.0.0.1 | ||
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* 2012-04-23 First Version | * 2012-04-23 First Version | ||
- | + | * 2012-07-11 2nd version | |
- | * recent log | + | * new: single track extractor to evaluate tracks by comparing to the volume rendering of the original stack. |
+ | * new: Capability to use track color-coding from the output of MTrackJ. FOr using the output of MTrackJ, another jython script that converts the data structure is required (description will be added later). | ||
+ | * recent log in detail | ||
{{rss> | {{rss> | ||
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Download the plugin using this link: | Download the plugin using this link: | ||
- | * [[https:// | + | * [[https:// |
The plugin will appear under the following menu tree: [Plugins -> EMBLTools -> 4D track Plotter]. | The plugin will appear under the following menu tree: [Plugins -> EMBLTools -> 4D track Plotter]. | ||
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===== Description ===== | ===== Description ===== | ||
- | This 3D visualization tool is an extended functionality for [[http:// | + | This 3D visualization tool is an extended functionality for [[http:// |
index - trackID - frame - x - y - z - scaled x - scaled y - scaled z - particleID | index - trackID - frame - x - y - z - scaled x - scaled y - scaled z - particleID | ||
[{{ : | [{{ : | ||
+ | |||
+ | ==== workflow ==== | ||
+ | |||
+ | - Click " | ||
+ | - Decide if you would like to visualize tracks as a static 3D path, or dynamic 4D path (" | ||
+ | - 4D path consumes memory. If your machine does not have enough memory or CPU power, you might need to wait for a very long time if your data is large. | ||
+ | - Decide if you want to also see path nodes. | ||
+ | - Activate the checkbox according to your decision. | ||
+ | - 4D path / nodes cannot be visualized together with 3D path and vice versa. | ||
+ | - click " | ||
+ | |||
+ | === MTrackJ file === | ||
+ | For loading MTrackJ output file, the file should first be converted using [[https:// | ||
+ | |||
+ | ==== Example of coordinate data ==== | ||
+ | |||
+ | Below is an example of data file that could be loaded from 3D tracker viewer. SXpos,SYpos &SZpos are the columns of 3D coordinates that will be used for the plotting. S stands for scaled. | ||
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+ | </ | ||
downloads/3dtrackviewer.1341004556.txt.gz · Last modified: 2016/05/24 12:46 (external edit)