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--- downloads:frap_analysis [2012/02/07 13:18] – added papers kota
+++ downloads:frap_analysis [2017/05/11 15:09] – kota
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 [{{ http://cmci.embl.de/dls/FRAPmanual_files/image069.jpg}}]
 ====== FrapCalc ======
-Analyze FRAP curves and get parameter by curve fitting ([[http://cmci.embl.de/documents/frapmanu|documentation.]]). Lecture notes are also available ([[http://cmci.embl.de/documents/100420frapinternal | Lecture Notes (Apr. 2010)]])
+**Please jump to [[https://cmci-embl.gitlab.io/docs/analysis/frapcalc/|the new page!]]**
+<color WhiteSmoke> Analyze FRAP curves and get parameter by curve fitting ([[http://cmci.embl.de/documents/frapmanu|documentation.]]). Lecture notes are also available ([[http://cmci.embl.de/documents/100420frapinternal | Lecture Notes (Apr. 2010)]])
 ===== Author =====
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 ===== Installation =====
-Download [[http://cmci.embl.de/dls/K_FRAPcalcV9k.ipf|K_FRAPcalcV9k.ipf]] to a place where you can access easily. Open the file in IgorPro and compile.
+Download [[http://cmci.embl.de/dls/K_FRAPcalcV9k.ipf|K_FRAPcalcV9k.ipf]] to a place where you can access easily (you might need to right click or ctrl-click and then save it to your local machine). Open the file in IgorPro and compile.
 ===== Description =====
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   * Batch Fitting
-===== Linked Literature =====
+===== Papers + Misc =====
 ==== Papers using this script ====
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   * Hoppa, M.B. et al., 2009. Chronic palmitate exposure inhibits insulin secretion by dissociation of Ca(2+) channels from secretory granules. Cell metabolism, 10(6), p.455-65. [[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2814048&tool=pmcentrez&rendertype=abstract|Accessed February 7, 2012]].
   * Treeck, M. et al., 2009. Functional analysis of the leading malaria vaccine candidate AMA-1 reveals an essential role for the cytoplasmic domain in the invasion process. PLoS pathogens, 5(3), p.e1000322. [[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2654807&tool=pmcentrez&rendertype=abstract|Accessed February 7, 2012]].
+  * Bancaud, A., Huet, S., Rabut, G., Ellenberg, J., 2010. Fluorescence perturbation techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, photoactivation, photoconversion, and FLIP. Cold Spring Harb. Protoc. 2010, pdb.top90.
   * Bosch-Presegué, L. et al., 2011. Stabilization of Suv39H1 by SirT1 is part of oxidative stress response and ensures genome protection. Molecular cell, 42(2), p.210-23. [[http://www.ncbi.nlm.nih.gov/pubmed/21504832|Accessed January 30, 2012]].
   * Caillier, B. et al., 2011. QRS widening and QT prolongation under bupropion: a unique cardiac electrophysiological profile. Fundamental & clinical pharmacology. [[http://www.ncbi.nlm.nih.gov/pubmed/21623902|Accessed February 7, 2012]].
+  * Díaz, A. et al., 2011. Processivity and subcellular localization of glycogen synthase depend on a non-catalytic high affinity glycogen-binding site. The Journal of biological chemistry, 286(21), p.18505-14. [[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3099667&tool=pmcentrez&rendertype=abstract|Accessed February 7, 2012]].
+  * Coutinho-Budd J, Ghukasyan V, Zylka MJ, Polleux F. The F-BAR domains from srGAP1, srGAP2 and srGAP3 regulate membrane deformation differently. Journal of cell science. 2012;125(Pt 14):3390–401. [[ http://www.ncbi.nlm.nih.gov/pubmed/22467852|Accessed October 10, 2012]].
 ... searches were done by google hits, so if YOURS is missing please tell me!
 ==== Web Back Links ====
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     * Fitting of averaged curve is done with actual standard deviation
     * BatchFitting() was added to the last line of BatchAverageAndFit()
+</color>