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downloads:hyperstackexporttoimaris [2010/08/06 14:24] – created kotadownloads:hyperstackexporttoimaris [2016/05/24 12:46] (current) – external edit 127.0.0.1
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 +~~NOTOC~~
 ====== Export Hyperstack to Imaris ====== ====== Export Hyperstack to Imaris ======
 +
 +{{ :documents:ijplugin_hyperstackexporter.jpg|}}
  
 ===== Author ===== ===== Author =====
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 A commercial software [[http://www.bitplane.com|Imaris (Bitplane) ver 7.0.0]] and its optional module [[http://www.bitplane.com/go/products/imarisxt|ImarisXT]].  A commercial software [[http://www.bitplane.com|Imaris (Bitplane) ver 7.0.0]] and its optional module [[http://www.bitplane.com/go/products/imarisxt|ImarisXT]]. 
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 ===== Installation ===== ===== Installation =====
    
 You need to install several files. \\ You need to install several files. \\
-  - Download **[[http://cmci.embl.de/dls/Imaris_Jacob.jar|Imaris_Jacob.jar]]** and place the file in the plugin folder of ImageJ. +  - Download **[[http://cmci.embl.de/dls/ImarisPlugin3_.jar|ImarisPlugin3_.jar]]** and place the file in the plugin folder of ImageJ. 
   - Download jacob-1.15-M3.zip from [[http://sourceforge.net/projects/jacob-project/|JACOB site]] (JACOB bridge is a module that bridges between Java and Windows application). Unzip the file and then   - Download jacob-1.15-M3.zip from [[http://sourceforge.net/projects/jacob-project/|JACOB site]] (JACOB bridge is a module that bridges between Java and Windows application). Unzip the file and then
     * place **jacob-1.15-M3-x86.dll** (if your machine is 64-bit, then **jacob-1.15-M3-x64.dll**) in a directory where system path is set in your machine. In my case, I copied it under C:\Sun\SDK\jdk\jre\bin.      * place **jacob-1.15-M3-x86.dll** (if your machine is 64-bit, then **jacob-1.15-M3-x64.dll**) in a directory where system path is set in your machine. In my case, I copied it under C:\Sun\SDK\jdk\jre\bin. 
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   * In the panel "Stack Export to Imaris", click appropriate button that matches with the dimension of your stack. Then wait for the exporting to finish.    * In the panel "Stack Export to Imaris", click appropriate button that matches with the dimension of your stack. Then wait for the exporting to finish. 
   * You could close this "Imaris Interface" window. Although there is check button saying "Exit Imaris when closing this dialog", Imaris survives even when ImageJ is terminated.    * You could close this "Imaris Interface" window. Although there is check button saying "Exit Imaris when closing this dialog", Imaris survives even when ImageJ is terminated. 
 +
 +===== Development =====
 +
 +I noted some memos on JAVA-JACOB usage in below entries. 
 +
 +http://cmci.embl.de/blogtng/2010-06-17/imaris_-_java
 +
 +http://cmci.embl.de/blogtng/2010-08-03/coding_memo_for_jacob_bridge_between_java_and_bitplane_imaris
  
 ===== Acknowledgement ===== ===== Acknowledgement =====
  
 This plugin was written on top of example java application "HelloImaris.java" written by Volker Baecker, which is available in the Bitplane website.  This plugin was written on top of example java application "HelloImaris.java" written by Volker Baecker, which is available in the Bitplane website. 
downloads/hyperstackexporttoimaris.1281104681.txt.gz · Last modified: 2016/05/24 12:46 (external edit)

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