downloads:particletracker2d
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downloads:particletracker2d [2010/11/19 13:25] – kota | downloads:particletracker2d [2013/11/08 11:54] – [Description] kota | ||
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- | ====== Particle Tracker (2D) ====== | ||
- | ~~NOTOC~~ | ||
- | [{{ : | ||
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- | ==== Author ==== | ||
- | Kota Miura\\ | ||
- | Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg\\ | ||
- | miura at embl dot de Tel: +49 6221 387 404\\ \\ | ||
- | ==== History ==== | ||
- | 10-11-19 First release\\ \\ | ||
- | === Source === | ||
- | Released under the GNU General Public License.\\ \\ | ||
- | ==== Installation ==== | ||
- | Download [[http:// | ||
- | |||
- | ==== Requires ==== | ||
- | ImageJ ver 1.44h or higher ([[http:// | ||
- | ==== Description ==== | ||
- | ParticleTracker plugin written by Guy Levy (Computational Biophysics Lab, ETH Zurich) added with interactive export of segmentation and tracking results to ImageJ results table. [[http:// | ||
- | < | ||
- | **I. F. Sbalzarini and P. Koumoutsakos.**\\ | ||
- | **Feature point tracking and trajectory analysis for video imaging in cell biology.** \\ | ||
- | J. Struct. Biol., 151(2): 182-195, 2005.\\ | ||
- | [[http:// | ||
- | </ | ||
- | |||
- | ==== Work Flow ==== | ||
- | [{{ : | ||
- | [{{ : | ||
- | [{{ : | ||
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- | * 1. **Segmentation and Tracking ** | ||
- | * Follow instructions in [[https:// | ||
- | |||
- | * 2. **Transferring all trajectory data** | ||
- | * In the ParticleTracking Results window (see Fig.1), click "All Trajectory to Table" button. All trajectory data will be then transferred to the results table of ImageJ, which then could be directly accessed using ImageJ macro and other scripting languages (Fig. 3). | ||
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- | * 3. **Transferring all segmented particle data** | ||
- | * Similarly, | ||
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- | * 4. **Transferring Specific Trajectory data** | ||
- | * You could export only a specific trajectory. First, visualize trajectories by clicking " | ||
downloads/particletracker2d.txt · Last modified: 2020/11/26 09:11 by 127.0.0.1