downloads:particletracker2d
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downloads:particletracker2d [2012/05/22 11:19] – kota | downloads:particletracker2d [2020/11/26 09:11] (current) – external edit 127.0.0.1 | ||
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- | ====== Particle Tracker (2D) Extended====== | + | ===== Particle Tracker (2D) Extended===== |
[{{ : | [{{ : | ||
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==== History ==== | ==== History ==== | ||
10-11-19 First release\\ \\ | 10-11-19 First release\\ \\ | ||
+ | |||
+ | === recent | ||
+ | {{rss> | ||
+ | |||
=== Source === | === Source === | ||
- | [[https:// | + | [[https:// |
==== Installation ==== | ==== Installation ==== | ||
- | Download [[http://cmci.embl.de/dls/ParticleTracker_.jar|ParticleTracker_.jar]] and place it in the ImageJ plugin folder.\\ \\ | + | Download [[https://github.com/miura/ParticleTrackerExt/ |
+ | By [Help > Refresh Menu] or by re-launching ImageJ, you will find new menu items under **[Plugins > Particle Tracker Classic > | ||
+ | |||
+ | (following not working at the moment 20131107) | ||
If you are using Fiji: Instead of installing manually, you could also set automatic download & updates by registering our update site. | If you are using Fiji: Instead of installing manually, you could also set automatic download & updates by registering our update site. | ||
< | < | ||
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</ | </ | ||
For managing update site, [[http:// | For managing update site, [[http:// | ||
- | |||
==== Requires ==== | ==== Requires ==== | ||
ImageJ ver 1.44h or higher ([[http:// | ImageJ ver 1.44h or higher ([[http:// | ||
==== Description ==== | ==== Description ==== | ||
ParticleTracker plugin written by Guy Levy (Computational Biophysics Lab, ETH Zurich) added with interactive export of segmentation and tracking results to ImageJ results table. [[http:// | ParticleTracker plugin written by Guy Levy (Computational Biophysics Lab, ETH Zurich) added with interactive export of segmentation and tracking results to ImageJ results table. [[http:// | ||
- | <quote> | + | |
+ | **As of Nov. 2013, there is a [[http:// | ||
+ | |||
+ | When you use this plugin, please cite: | ||
+ | |||
+ | <blockquote> | ||
**I. F. Sbalzarini and P. Koumoutsakos.**\\ | **I. F. Sbalzarini and P. Koumoutsakos.**\\ | ||
**Feature point tracking and trajectory analysis for video imaging in cell biology.** \\ | **Feature point tracking and trajectory analysis for video imaging in cell biology.** \\ | ||
J. Struct. Biol., 151(2): 182-195, 2005.\\ | J. Struct. Biol., 151(2): 182-195, 2005.\\ | ||
[[http:// | [[http:// | ||
- | </quote>\\ | + | </blockquote>\\ |
==== Work Flow ==== | ==== Work Flow ==== | ||
[{{ : | [{{ : | ||
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* You could export only a specific trajectory. First, visualize trajectories by clicking " | * You could export only a specific trajectory. First, visualize trajectories by clicking " | ||
+ | ==== Application: | ||
+ | |||
+ | Tracking results should be analyzed... and the best convenient way is to analyze the tracked data statistically using R. | ||
+ | |||
+ | A tutorial that was given in EMBO cell biology course is on of such. If you are interested, follow the link below: | ||
+ | |||
+ | * [[documents: | ||
+ | |||
==== IJ Macro and Scripting ==== | ==== IJ Macro and Scripting ==== | ||
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} | } | ||
</ | </ | ||
- | https:// | + | https:// |
You could test this by directly executing the script by | You could test this by directly executing the script by | ||
< | < | ||
- | jsstr =File.openUrlAsString(" | + | jsstr =File.openUrlAsString(" |
eval(" | eval(" | ||
</ | </ | ||
- |
downloads/particletracker2d.1337685542.txt.gz · Last modified: 2016/05/24 12:46 (external edit)