mcib_plugins.analysis

Class spatialAnalysis

java.lang.Object

mcib_plugins.analysis.spatialAnalysis

public class spatialAnalysis
extends java.lang.Object

Description of the Class

Constructor Summary

Constructors

Constructor and Description
spatialAnalysis(int numPoints, int numRandomSamples, double distHardCore, double env)

Method Summary

Modifier and Type	Method and Description
static void	createMask(ImagePlus plus)
ImageHandler	getRandomSample()
double	getSdi_F()
double	getSdi_G()
double	getSdi_H()
boolean	process(ImagePlus plusSpots, ImagePlus plusMask, java.lang.String functions, boolean verbose, boolean show, boolean save)
void	processAll(ImageHandler plusSpots, ImageHandler plusMask, boolean verbose, boolean show, boolean save)
void	processAll(ImagePlus plusSpots, ImagePlus plusMask, boolean verbose, boolean show, boolean save)
void	setColorsPlot(java.awt.Color avg, java.awt.Color env, java.awt.Color obs)
void	setMultiThread(int nb)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

spatialAnalysis

public spatialAnalysis(int numPoints,
                       int numRandomSamples,
                       double distHardCore,
                       double env)

Method Detail

createMask

public static void createMask(ImagePlus plus)

setMultiThread

public void setMultiThread(int nb)

process

public boolean process(ImagePlus plusSpots,
                       ImagePlus plusMask,
                       java.lang.String functions,
                       boolean verbose,
                       boolean show,
                       boolean save)

processAll

public void processAll(ImageHandler plusSpots,
                       ImageHandler plusMask,
                       boolean verbose,
                       boolean show,
                       boolean save)

processAll

public void processAll(ImagePlus plusSpots,
                       ImagePlus plusMask,
                       boolean verbose,
                       boolean show,
                       boolean save)

getSdi_F

public double getSdi_F()

getSdi_G

public double getSdi_G()

getSdi_H

public double getSdi_H()

getRandomSample

public ImageHandler getRandomSample()

setColorsPlot

public void setColorsPlot(java.awt.Color avg,
                          java.awt.Color env,
                          java.awt.Color obs)