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A

AFFINE - Static variable in class de.embl.cmci.registration.MultiStackReg_
 

C

compareTo(Object) - Method in class de.embl.cmci.registration.Compress_Matrices.listElement
 
Compress_Matrices - Class in de.embl.cmci.registration
 
Compress_Matrices() - Constructor for class de.embl.cmci.registration.Compress_Matrices
 
Compress_Matrices.listElement - Class in de.embl.cmci.registration
 
Compress_Matrices.listElement(int, double[][]) - Constructor for class de.embl.cmci.registration.Compress_Matrices.listElement
 
Compress_Matrices.listElement(int, double[][], String) - Constructor for class de.embl.cmci.registration.Compress_Matrices.listElement
 
core(String, String) - Method in class de.embl.cmci.registration.MultiStackReg_
srcFile: full path to a text file, (1) If "Align" or "As Reference" is selected and save transformation is checked, transformation will be logged.
createAdmissibleImageList() - Method in class de.embl.cmci.registration.MultiStackReg_
 

D

de.embl.cmci.registration - package de.embl.cmci.registration
 

G

getInsets() - Method in class de.embl.cmci.registration.MultiStackRegCredits
 

I

index - Variable in class de.embl.cmci.registration.Compress_Matrices.listElement
 

K

keepWriting(Object) - Method in class de.embl.cmci.registration.Compress_Matrices
 

M

MultiStackReg_ - Class in de.embl.cmci.registration
 
MultiStackReg_() - Constructor for class de.embl.cmci.registration.MultiStackReg_
 
MultiStackRegCredits - Class in de.embl.cmci.registration
 
MultiStackRegCredits(Frame) - Constructor for class de.embl.cmci.registration.MultiStackRegCredits
 

P

processDirectives(ImagePlus, boolean) - Method in class de.embl.cmci.registration.MultiStackReg_
....................................................................
processFile(String) - Method in class de.embl.cmci.registration.Compress_Matrices
 

R

RIGID_BODY - Static variable in class de.embl.cmci.registration.MultiStackReg_
 
run(String) - Method in class de.embl.cmci.registration.Compress_Matrices
 
run(String) - Method in class de.embl.cmci.registration.MultiStackReg_

S

SCALED_ROTATION - Static variable in class de.embl.cmci.registration.MultiStackReg_
 
setLoadFile(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setLoadPath(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setSaveFile(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setSavePath(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setSaveTransform(boolean) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setSrcAction(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setSrcImg(ImagePlus) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setTgtAction(String) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setTgtImg(ImagePlus) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setTransformation(int) - Method in class de.embl.cmci.registration.MultiStackReg_
Use field values for setting the translformation type.
setTwoStackAlign(boolean) - Method in class de.embl.cmci.registration.MultiStackReg_
 
setViewManual(boolean) - Method in class de.embl.cmci.registration.MultiStackReg_
 
sliceSquish(Compress_Matrices.listElement, Compress_Matrices.listElement) - Method in class de.embl.cmci.registration.Compress_Matrices
 
solveEQ(double[][], double[][]) - Method in class de.embl.cmci.registration.Compress_Matrices
 
solveRBEQ(double[][], double[][]) - Method in class de.embl.cmci.registration.Compress_Matrices
 
squishArrays() - Method in class de.embl.cmci.registration.Compress_Matrices
 
startWriting() - Method in class de.embl.cmci.registration.Compress_Matrices
 
stringToSet(String) - Method in class de.embl.cmci.registration.Compress_Matrices
 

T

TRANSLATION - Static variable in class de.embl.cmci.registration.MultiStackReg_
 
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