mainpages:courses:201902stuttgart
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+ | ====== Bin-BW ImageJ workshop: Stuttgart Feb, 2019 ====== | ||
+ | {{: | ||
+ | ===== Date ===== | ||
+ | |||
+ | Febuary 25th and 26th, 2019 | ||
+ | |||
+ | ===== Introduction ===== | ||
+ | |||
+ | As part of the initiative Bin-BW (Bioimage-Net Baden-Württemberg) the Bioimaging Center of the University of Konstanz offers workshops in image analysis based on the open-source software ImageJ. | ||
+ | |||
+ | The **two-day ImageJ macro workshop** teaches the ImageJ macro programming for biological / biomedical image analysis. The goal of the workshop is that participants acquire basic programming techniques for analyzing image data. | ||
+ | |||
+ | Participation is most fruitful for learners who are conducting biological or medical research and are already using (light) microscopy for quantification purposes, and also has some experiences in using ImageJ. | ||
+ | |||
+ | Participants should bring their own laptops. Instructions on how to install ImageJ is explained in below. | ||
+ | |||
+ | ===== Location ===== | ||
+ | |||
+ | The Bin-BW ImageJ workshop will take place at the University of Stuttgart. The schedule is shown in the table below. | ||
+ | |||
+ | ===== Workshop trainer ===== | ||
+ | |||
+ | Kota Miura (kotapub@gmail.com), | ||
+ | |||
+ | ===== Preparation before coming ===== | ||
+ | |||
+ | 1. Please download Fiji from the following URL. | ||
+ | * https:// | ||
+ | |||
+ | 2. Start Fiji, then in the menu [Help > Update...] | ||
+ | * A window " | ||
+ | * Another window called " | ||
+ | * Close the " | ||
+ | * In the " | ||
+ | |||
+ | |||
+ | ===== Schedule ===== | ||
+ | |||
+ | ==== Feb 25th ==== | ||
+ | |||
+ | * 10:30 -12: | ||
+ | * Setting up | ||
+ | * using script editor in Fiji | ||
+ | * Hello World | ||
+ | * 13:00 - 17:00 | ||
+ | * Looping | ||
+ | * Conditions | ||
+ | * Arrays | ||
+ | * A bit more advanced techniques | ||
+ | * assignments/ | ||
+ | |||
+ | === Feb 26th === | ||
+ | |||
+ | * 10:30 - 12:00 | ||
+ | * string operations | ||
+ | * File system IO | ||
+ | * assignments/ | ||
+ | * 13:00 - 17:00 | ||
+ | * colocalization analysis, FRET - using plugin in IJ macro | ||
+ | * assignments/ | ||
+ | |||
+ | From time to time, with coffee breaks in between for both days. | ||
+ | This will be not the exact schedule. It will be adjusted depending on the progress. | ||
+ | |||
+ | /* | ||
+ | {{url> | ||
+ | */ |
mainpages/courses/201902stuttgart.txt · Last modified: 2019/02/21 15:40 by kota