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+====== Bin-BW ImageJ workshop: Stuttgart Feb, 2019 ======
+{{:mainpages:courses:konstanz:bic.png?150 |}}{{:mainpages:courses:konstanz:bw.png?200 |}}{{:mainpages:courses:konstanz:unikonstanz.png?150 |}}
+===== Date =====
+Febuary 25th and 26th, 2019
+===== Introduction =====
+As part of the initiative Bin-BW (Bioimage-Net Baden-Württemberg) the Bioimaging Center of the University of Konstanz offers workshops in image analysis based on the open-source software ImageJ.
+The **two-day ImageJ macro workshop** teaches the ImageJ macro programming for biological / biomedical image analysis. The goal of the workshop is that participants acquire basic programming techniques for analyzing image data.
+Participation is most fruitful for learners who are conducting biological or medical research and are already using (light) microscopy for quantification purposes, and also has some experiences in using ImageJ.
+Participants should bring their own laptops. Instructions on how to install ImageJ is explained in below.
+===== Location =====
+The Bin-BW ImageJ workshop will take place at the University of Stuttgart. The schedule is shown in the table below.
+===== Workshop trainer =====
+Kota Miura (kotapub@gmail.com), Freelance Bioimage Analyst & Vice Chair, NEUBAIS (The Network of European Bioimage Analysts)
+===== Preparation before coming =====
+. Please download Fiji from the following URL.
+  * https://imagej.net/Fiji/Downloads
+. Start Fiji, then in the menu [Help > Update...]
+  * A window "ImageJ updater" opens. In that window, click the button "Manage update sites" at the bottom-left.
+  * Another window called "Manage Update Sites" opens. From the list of update sites, tick "CMCI-EMBL".
+  * Close the "Manage update sites" window by clicking the button "close".
+  * In the "ImageJ updater" window, click the button "apply changes" at the bottom. It takes a while to download additional files. When completed, you will be asked to restart Fiji - so quit Fiji, and relaunch Fiji. Check the menu and there should be a new menu item "EMBL".
+===== Schedule =====
+==== Feb 25th ====
+  * 10:30 -12:00
+     * Setting up
+     * using script editor in Fiji
+     * Hello World
+  * 13:00 - 17:00
+     * Looping
+     * Conditions
+     * Arrays
+     * A bit more advanced techniques
+     * assignments/answers
+=== Feb 26th ===
+  * 10:30 - 12:00
+     * string operations
+     * File system IO
+     * assignments/answers
+  * 13:00 - 17:00
+     * colocalization analysis, FRET - using plugin in IJ macro
+     * assignments/answers
+From time to time, with coffee breaks in between for both days.
+This will be not the exact schedule. It will be adjusted depending on the progress.
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