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mainpages:documents [2016/05/24 12:46] – external edit 127.0.0.1mainpages:documents [2022/10/27 15:53] (current) – [Bindings] kota
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 ===== CODING ===== ===== CODING =====
-  * [[documents:100825ImageJ_Jython_Eclipse| Interactively using ImageJ from Eclipse console - Installation]] +  * [[documents:200720IJMacro_Headless| ImaegJ Macro Headless Limitations (2007)]] 
-  * [[documents:100825ImageJ_Eclipse_debugging| Setting Up ImageJ Plugin Debugging Environment for Eclipse]] +  * [[documents:100825ImageJ_Jython_Eclipse| Interactively using ImageJ from Eclipse console - Installation (2010)]] 
-  * [[documents:120618FijiJythonInEclipse| Using Fiji Jython interpreter in Eclipse]]+  * [[documents:100825ImageJ_Eclipse_debugging| Setting Up ImageJ Plugin Debugging Environment for Eclipse (2010)]] 
 +  * [[documents:120618FijiJythonInEclipse| Using Fiji Jython interpreter in Eclipse (2012)]] 
 +  * [[documents:190415IJMacro_ScriptParameters| Script Parameter CheatSheet (2019)]]  
 +  * [[documents:20221028Coding_PyimageJ_in_Container|Coding with PyimageJ in Container on VS Code (2022)]]
  
 ==== Bindings ==== ==== Bindings ====
  
-  * [[documents:101105IJ_R_Jython|Using ImageJ and R from Python simultaneously]]  +  * [[documents:101105IJ_R_Jython|Using ImageJ and R from Python simultaneously (2010)]]  
-  * [[documents:110524Java_Matlab|Using Matlab from Java]]+  * [[documents:110524Java_Matlab|Using Matlab from Java (2010)]] 
 + 
 +==== JAVADOCS ==== 
 +  * [[http://wiki.cmci.info/mcib3ddoc/| ImageJ 3D Suite Javadoc]]
  
 ==== Cookbooks & Tips==== ==== Cookbooks & Tips====
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   * [[documents:110822JSIP_Cooking:javascript_imagej_cookbook|Javascript & ImageJ,Fiji Cookbook]]   * [[documents:110822JSIP_Cooking:javascript_imagej_cookbook|Javascript & ImageJ,Fiji Cookbook]]
   * [[documents:120206PYIP_Cooking:python_imagej_cookbook|Python (Jython) & Fiji Cookbook]]   * [[documents:120206PYIP_Cooking:python_imagej_cookbook|Python (Jython) & Fiji Cookbook]]
-  * [[documents:110816PyIP_Cooking|Python Image Processing Cookbook]]  +  * [[documents:110816PyIP_Cooking|Python Image Processing Cookbook]]  
 +  * [[documents:201021IJMacroFragments|ImageJ Macro Fragments]] 
   * [[documents:120329JavaTips|Java Tips]]   * [[documents:120329JavaTips|Java Tips]]
   * [[documents:121106ScalaSetUp|ImageJ Scala coding setups]]   * [[documents:121106ScalaSetUp|ImageJ Scala coding setups]]
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   * [[documents:120905OSXinstallation|OSX software]]   * [[documents:120905OSXinstallation|OSX software]]
   * [[documents:130327CellCognition|CellCognition]]   * [[documents:130327CellCognition|CellCognition]]
 +  * [[https://quantixed.org/2018/10/23/new-lexicon-how-to-add-a-custom-minted-lexer-in-overleaf/|pygments ImageJ Macro Lexer]]
 +    * [[https://github.com/miura/pygments_lexer_IJmacro|See example Latex file (example.tex) for the usage of minted package.]] 
 ===== Command Line ===== ===== Command Line =====
 **headless** **headless**
-  * [[documents:101103ImageJ_Cluster_Short| ImageJ with Cluster@EMBL (Short)]] +  * [[documents:101103ImageJ_Cluster_Short| ImageJ with Cluster@EMBL (Short) - outdated]] 
-  * [[documents:100922ImageJ_Cluster| ImageJ with Cluster@EMBL (details)]]+  * [[documents:100922ImageJ_Cluster| ImageJ with Cluster@EMBL (details) - outdated]]
   * [[documents:101029ImageJ_CUI_LIFconversion| Converting Leica LIF file series to Tiff stacks from command line]]   * [[documents:101029ImageJ_CUI_LIFconversion| Converting Leica LIF file series to Tiff stacks from command line]]
   * [[documents:101124LOCIBioformats_bftoolsTip| Using Bioformats Command line Tools]]   * [[documents:101124LOCIBioformats_bftoolsTip| Using Bioformats Command line Tools]]
 +  * [[documents:20190416ijmacro_passingArguments| Passing stdout to ImageJ / Fiji]]
  
 **Python**  **Python** 
  
-  * [[documents:110803CompileSpyder| Compiling Spyder]] +  * [[documents:110803CompileSpyder| Compiling Spyder  - outdated]] 
-  * [[documents:110816openCV| Building OpenCV with Python Binding]] +  * [[documents:110816openCV| Building OpenCV with Python Binding  - outdated]] 
  
 **Server** **Server**
mainpages/documents.1464094015.txt.gz · Last modified: 2016/05/24 12:46 by 127.0.0.1

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