User Tools

Site Tools


mainpages:linksvideo

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
mainpages:linksvideo [2012/10/01 14:08] – [ImageJ installation in Windows] kotamainpages:linksvideo [2016/05/24 12:46] (current) – external edit 127.0.0.1
Line 1: Line 1:
 +====== Video Links ======
  
 +===== ImageJ Tutorials =====
 +
 +==== ImageJ installation in Windows (2 min 30 sec) ====
 +
 +{{http://www.youtube.com/v/QvN82ZB4rGA?.swf?600x400}}
 +
 +
 +==== Tutorial 01 Installing and Basics of ImageJ (46 min) ====
 +
 +{{http://www.youtube.com/v/_zgvo6GBdX8?.swf?600x400}}
 +==== ImageJ tutorial (71 min) ====
 +
 +{{http://www.youtube.com/v/KoqpCsha-UU?.swf?600x400}}
 +
 +
 +==== Optimizing epifluorescence images (7min 40sec) ====
 +
 +{{http://www.youtube.com/v/tZaIXM0NzIY?.swf?600x400}}
 +==== Particle Counting (7 min) ====
 +
 +  - Showing how to use [Analyze > Analyze Prticles...]
 +
 +{{http://www.youtube.com/v/js9ECPuoOwA?.swf?600x400}}
 +==== Cell Area Measurement ====
 +
 +- Segment cells using automatic thresholding, select cells using "magic wand" tool, store ROIs in roi manager. 
 +
 +{{http://www.youtube.com/v/WxTu2fn7QxY?.swf?600x400}}
 +
 +==== Measure Intensity Changes over Time ====
 +
 +  - This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].
 +
 +{{http://www.youtube.com/v/Gv7sJ7L2rRY?.swf?600x400}}
 +
 +==== Automatic Nucleus Counting (ITCN Plugin) ====
 +
 +  - Uses [[http://rsbweb.nih.gov/ij/plugins/itcn.html|ITCN (Image-based Tool for Counting Nuclei)]]
 +
 +{{http://www.youtube.com/v/PqHFsmS1_JY?.swf?600x400}}
 +
 +==== Track and analyze Brownian Motions (MTrack2 plugin) ====
 +
 +  - Uses plugin "MTrack2" by Nico, and Excel to analyze tracks. 
 +
 +{{http://www.youtube.com/v/MDIVDAIkdME?.swf?600x400}}
 +
 +==== Visualizing 3D (3Dviewer plugin) ====
 +
 +Videos showing how to use [[http://132.187.25.13/home/?category=Download&page=Viewer3D|3D viewer]], a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.  
 +
 +  - part 1
 +
 +{{http://www.youtube.com/v/cD3Hc3NYkaU?.swf?600x400}}
 +
 +  - part 2
 +
 +{{http://www.youtube.com/v/GqG_RcK3kYg?.swf?600x400}}

Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki