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mainpages:linksvideo [2012/10/01 07:12]
kota [Particle Counting]
mainpages:linksvideo [2016/05/24 05:46] (current)
Line 1: Line 1:
 +====== Video Links ======
  
 +===== ImageJ Tutorials =====
 +
 +==== ImageJ installation in Windows (2 min 30 sec) ====
 +
 +{{http://​www.youtube.com/​v/​QvN82ZB4rGA?​.swf?​600x400}}
 +
 +
 +==== Tutorial 01 Installing and Basics of ImageJ (46 min) ====
 +
 +{{http://​www.youtube.com/​v/​_zgvo6GBdX8?​.swf?​600x400}}
 +==== ImageJ tutorial (71 min) ====
 +
 +{{http://​www.youtube.com/​v/​KoqpCsha-UU?​.swf?​600x400}}
 +
 +
 +==== Optimizing epifluorescence images (7min 40sec) ====
 +
 +{{http://​www.youtube.com/​v/​tZaIXM0NzIY?​.swf?​600x400}}
 +==== Particle Counting (7 min) ====
 +
 +  - Showing how to use [Analyze > Analyze Prticles...]
 +
 +{{http://​www.youtube.com/​v/​js9ECPuoOwA?​.swf?​600x400}}
 +==== Cell Area Measurement ====
 +
 +- Segment cells using automatic thresholding,​ select cells using "magic wand" tool, store ROIs in roi manager. ​
 +
 +{{http://​www.youtube.com/​v/​WxTu2fn7QxY?​.swf?​600x400}}
 +
 +==== Measure Intensity Changes over Time ====
 +
 +  - This tutorial uses MBF package so the menu structure is different from the bare ImageJ. You could do the same with legacy ImageJ by [Image > Stacks > Plot Z-axis Profile].
 +
 +{{http://​www.youtube.com/​v/​Gv7sJ7L2rRY?​.swf?​600x400}}
 +
 +==== Automatic Nucleus Counting (ITCN Plugin) ====
 +
 +  - Uses [[http://​rsbweb.nih.gov/​ij/​plugins/​itcn.html|ITCN (Image-based Tool for Counting Nuclei)]]
 +
 +{{http://​www.youtube.com/​v/​PqHFsmS1_JY?​.swf?​600x400}}
 +
 +==== Track and analyze Brownian Motions (MTrack2 plugin) ====
 +
 +  - Uses plugin "​MTrack2"​ by Nico, and Excel to analyze tracks. ​
 +
 +{{http://​www.youtube.com/​v/​MDIVDAIkdME?​.swf?​600x400}}
 +
 +==== Visualizing 3D (3Dviewer plugin) ====
 +
 +Videos showing how to use [[http://​132.187.25.13/​home/?​category=Download&​page=Viewer3D|3D viewer]], a plugin written by Benjamin Schmid. If you install Fiji, this plugin comes along with the installation.  ​
 +
 +  - part 1
 +
 +{{http://​www.youtube.com/​v/​cD3Hc3NYkaU?​.swf?​600x400}}
 +
 +  - part 2
 +
 +{{http://​www.youtube.com/​v/​GqG_RcK3kYg?​.swf?​600x400}}
mainpages/linksvideo.txt ยท Last modified: 2016/05/24 05:46 (external edit)