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meeting:fiji2010 [2010/03/16 15:13] kotameeting:fiji2010 [2010/03/18 14:56] kota
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 ====== FIJI/ImageJ Tutorials/Workshops ====== ====== FIJI/ImageJ Tutorials/Workshops ======
 Fiji/ImageJ hands-on tutorials by FIJI Hackers Fiji/ImageJ hands-on tutorials by FIJI Hackers
- 
 ===== day 1 ===== ===== day 1 =====
  
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 image segmentation in biological images. image segmentation in biological images.
 Examples included: Examples included:
-  3D confocal stacks +  3D confocal stacks 
-  2D particle counting +  2D particle counting 
-  electron microscopy segmentation+  electron microscopy segmentation
 The algorithms will be: SIOUX, Level Sets, and a trainable machine The algorithms will be: SIOUX, Level Sets, and a trainable machine
 learning plugin. learning plugin.
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 Arganda/Frise/Longair/Schindelin Arganda/Frise/Longair/Schindelin
  
 +  - SIOX: Simple Interactive Object Extraction ([[http://pacific.mpi-cbg.de/wiki/index.php/SIOX:_Simple_Interactive_Object_Extraction |Link]])
 +    - Instructor: Ignacio Arganda_Carreras
 +    - example used: "embryo"
 +  - Level-set [[http://pacific.mpi-cbg.de/wiki/index.php/Level_Sets | Link]]
 +    - Instructor: Erwin Frise
 +    - example used: "dot-brot", "mri-stack"
 +  - NeuriteTracer [[http://pacific.mpi-cbg.de/~longair/examples/ |Link]]
 +    - Instructor: Mark Longair
 +    - example used: "example_for_tracing"
 ===== day 2 ===== ===== day 2 =====
  
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 Instructors:\\ Instructors:\\
 Saalfeld/Preibisch/Arganda/Cardona Saalfeld/Preibisch/Arganda/Cardona
 +
 +  - EM image stitching using TrakEM2
 +    - Instructor: Stephane Saarfeld
 +  - EM image registration in Z-axis bUnwarpJ
 +    - Instructor: Ignacio  
  
 ===== Instructions before the tutorial ===== ===== Instructions before the tutorial =====
meeting/fiji2010.txt · Last modified: 2020/11/26 09:11 by 127.0.0.1

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