Monday, January 29, 2007


Cihan succeeded in wrapping C++ code and create dll for a use in JAVA. This means that C++ codes can be used as a library in ImageJ. Great achievement!

Platform: Eclipse
Compiler: gcc

Cihan will write an easy manual for this.


Friday, January 26, 2007

New ImageJ Plugin Picks

Chemotaxis and Migration Tool
this is not a tracking program, but is an analysis tool for the tracks.

Radial Scattergraph
reads CVS format file and creates radial plot.

Tuesday, January 23, 2007

Biophys. J Picks

A Happy new year! (bit late..)

FCS modeling
Stick-and-Diffuse and Caged Diffusion: A Comparison to two Model of Synaptic Vesicle Dynamics
Chuck Yeung, Matthew Shtrahman, and X.L. Wu
Biophys. J. published 11 January 2007, 10.1529/biophysj.106.081794

Cell archtecture and protein diffusion

Anisotropy and Temperature Dependence of Myoglobin Translational Diffusion in Myocardium: Implication on Oxygen Transport and Cellular Architecture
Ping Chang Lin, Ulrike Kreutzer, and Thomas Jue
Biophys. J. published 11 January 2007, 10.1529/biophysj.106.094458

Jerome, Damian?
Upregulation of forces and morphogenic asymmetries in dorsal closure during Drosophila development
Xomalin G Peralta, Yusuke Toyama, Shane Hutson, Ruth Montague, Stephanos Venakides, Daniel P. Kiehart, and Glenn S. Edwards
Biophys. J. published 11 January 2007, 10.1529/biophysj.106.094110

title seems obvious but way they analyze might be iteresting.
Neutrophil Traction Stresses Are Concentrated in the Uropod during Migration
Lee A Smith, Daniel A. Hammer, Micah Dembo, Helim Aranda-Espinoza, and Jered B Haun
Biophys. J. published 11 January 2007, 10.1529/biophysj.106.102822

Cellulose synthese movement is quite mysterious.
The Cellulose Synthase Complex: a polymerization driven supramolecular motor
Fabiana Diotallevi and Bela Mulder
Biophys. J. published 19 January 2007, 10.1529/biophysj.106.099473

Kinesin Moving through the Spotlight: Single-Motor Fluorescence Microscopy with Submillisecond Time Resolution
Sander Verbrugge, Lukas C Kapitein, and Erwin J. G. Peterman
Biophys. J. published 19 January 2007, 10.1529/biophysj.106.093575

important topic!
Classical vs. Stochastic Kinetics Modeling of Biochemical Reaction Systems
John Goutsias
Biophys. J. published 11 January 2007, 10.1529/biophysj.106.093781