Course Utilities

Kota Miura
Centre for Molecular and Cellular Imaging (CMCI)
EMBL Heidelberg
miura at embl dot de
Tel: +49 6221 387 404

• 12-05-30 First verison
• 12-09-21 Added course module plugins, references

• replaced url (2023/02/20 19:11)
• v1.0.8 (2023/02/20 19:11)
• version 1.06 to version 1.07 (2018/07/13 17:36)
• added links to two new image files (2018/07/13 17:36)
• added micrometer sample image (2016/04/22 12:22)
• added Tsukada's sample images (2016/03/01 01:38)
• added invitroMT3.tif (2016/02/27 02:21)
• pom version 1.0.2, parent switched to imagej (2015/10/12 23:03)
• invitroMT.tif added (2015/10/12 22:47)
• ver 1.0.1 added NucSeq4.zip (2015/08/28 09:31)

Released under the GNU General Public License v2.

ImageJ ver 1.34j or higher (ImageJ, upgrade page), or Fiji.

There are two ways.

1. Use Fiji Updater.
2. Manually download the plugin and install.

Follow the instruction in Fiji Wiki to add “CMCI-EMBL” to your updater. The advantage of using this method over manual download & installation is that the plugin is automatically updated when I upgrade it in future.

Download the plugin EMBL_sampleimages-1.0.x.jar from the latest release in the following page:

https://github.com/cmci/CourseUtil/releases/

and place it in the plugin folder of ImageJ (or Fiji).

This plugin adds a new menu “EMBL” in the menu bar

• To load and open sample images used for image analysis courses.
• To use various functions for learning image processing algorithms. A collection of plugins available from the following sites:
  • ImageJ Plugins by Prof. Sebastiano Battiato
  • fiji site