documents:101103imagej_cluster_short
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| documents:101103imagej_cluster_short [2016/05/24 12:46] – external edit 127.0.0.1 | documents:101103imagej_cluster_short [2020/11/26 09:11] (current) – external edit 127.0.0.1 | ||
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| ====== Using Cluster (Quick Version) ====== | ====== Using Cluster (Quick Version) ====== | ||
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| + | **Note: This page is outdated (June 1, 2016)**. I will prepare a newer version. | ||
| Since most of the scripts for cluster use is located under a specific directory in the ALMF server, I recommend you to add the path to your .tcshrc as below. | Since most of the scripts for cluster use is located under a specific directory in the ALMF server, I recommend you to add the path to your .tcshrc as below. | ||
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| To process image file /a/b/c.tif with an ImageJ macro file /d/e/f.ijm, like above, but with cluster | To process image file /a/b/c.tif with an ImageJ macro file /d/e/f.ijm, like above, but with cluster | ||
| - | <quote> | + | <blockquote> |
| **sh qsubIJ /d/e/f.ijm / | **sh qsubIJ /d/e/f.ijm / | ||
| - | </quote> | + | </blockquote> |
| Job will be submitted to the cluster, and what should be the output from ImageJ will be saved as a text file in your ALMF home directory: | Job will be submitted to the cluster, and what should be the output from ImageJ will be saved as a text file in your ALMF home directory: | ||
documents/101103imagej_cluster_short.1464094015.txt.gz · Last modified: 2016/06/01 09:57 (external edit)