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documents:110822jsip_cooking:javascript_imagej_cookbook [2016/06/01 09:33] – [Checking Java3D version] kotadocuments:110822jsip_cooking:javascript_imagej_cookbook [2020/11/26 08:24] (current) – kota
Line 60: Line 60:
 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/PathStringManagement.js]]+[[https://github.com/miura/ijmacros/blob/master/PathStringManagement.js]]
  
 ==== Loading CSV file (data table) ==== ==== Loading CSV file (data table) ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/CSVloader.js]]+[[https://github.com/miura/ijmacros/blob/master/CSVloader.js]]
  
 ==== Saving CSV file (data table) ==== ==== Saving CSV file (data table) ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/ImageMath.js]]+[[https://github.com/miura/ijmacros/blob/master/ImageMath.js]]
  
 ==== Batch Trainable Segmentation using Trained Data ==== ==== Batch Trainable Segmentation using Trained Data ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/TrainableSegmentationByTrained.js]]+[[https://github.com/miura/ijmacros/blob/master/TrainableSegmentationByTrained.js]]
  
 Another version without using the plugin above.  Another version without using the plugin above. 
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 %gist(1663061)% %gist(1663061)%
-[gist cmci/1663061]+ 
 +https://gist.github.com/miura/1663061 
 +<code:js> 
 +importClass(Packages.ij3d.image3d.IntImage3D); 
 +imp=IJ.getImage(); 
 +ima=new IntImage3D(imp.getStack()); 
 +r=3; 
 +ima2=ima.createLocalMaximaImage(r,r,r, true); 
 +plus=new ImagePlus("localmaxima",ima2.getStack()); 
 +plus.show(); 
 +</code>
  
 ==== Transformation of 3D stack according to given landmark pairs ==== ==== Transformation of 3D stack according to given landmark pairs ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/affinetransform3Dv2.js]]+[[https://github.com/miura/ijmacros/blob/master/affinetransform3Dv2.js]]
  
 ==== 3D tracking of spots, and plotting of the resulted spots in a new Stack ==== ==== 3D tracking of spots, and plotting of the resulted spots in a new Stack ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/3Ddots.js]]+[[https://github.com/miura/ijmacros/blob/master/3Ddots.js]]
  
 ===== Math ===== ===== Math =====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/roiProfileGaussFitterV3.js]]+[[https://github.com/miura/ijmacros/blob/master/roiProfileGaussFitterV3.js]]
  
 ==== Gaussian fitting of Intensity Profile ==== ==== Gaussian fitting of Intensity Profile ====
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 </code> </code>
  
-[[https://github.com/cmci/ijmacros/blob/master/roiProfileGaussFitterV3.js]]+[[https://github.com/miura/ijmacros/blob/master/roiProfileGaussFitterV3.js]]
  
  
documents/110822jsip_cooking/javascript_imagej_cookbook.1464773608.txt.gz · Last modified: 2016/06/01 09:33 by kota
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