documents:ijcourses
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documents:ijcourses [2016/05/16 16:30] – [Basics of Image Processing and Analysis] kota | documents:ijcourses [2020/11/26 09:11] (current) – external edit 127.0.0.1 | ||
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+ | ====== Bioimage Data Analysis ====== | ||
+ | / | ||
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+ | The book " | ||
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+ | {{ : | ||
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+ | < | ||
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+ | ====== ImageJ Course Textbooks ====== | ||
+ | |||
+ | Textbooks were first used in 2006 and then progressively updated since then. As the evolution of ImageJ seems to never stop, the textbooks will continue to be updated. Please come back to this page if you want to get the latest version. | ||
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+ | Copyright is reserved and download is free for non-commercial purpose. If you want to use these textbooks for charged-courses or commercial purpose, please tell me so I can charge you :). If there is any chance please acknowledge the author whenever you could. | ||
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+ | ===== Basics of Image Processing and Analysis ===== | ||
+ | [[https:// | ||
+ | |||
+ | [[http:// | ||
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+ | [[https:// | ||
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+ | Basic course aims at biological researchers to learn basic knowledge and handling of image data using ImageJ. The textbook covers following topics: | ||
+ | |||
+ | * Basics of Basics | ||
+ | * Intensity | ||
+ | * Filtering | ||
+ | * Segmentation | ||
+ | * Analyzing Time-Series | ||
+ | |||
+ | Click the textbook image to download the PDF (app. 5Mb., 156 pages). | ||
+ | |||
+ | To works with example images, install CMCI sample image loader plugin downloadable [[http:// | ||
+ | |||
+ | If you want to contribute to the textbook, you could fork the textbook project from its [[https:// | ||
+ | |||
+ | Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | ||
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+ | https:// | ||
+ | |||
+ | ==== update log ==== | ||
+ | {{rss> | ||
+ | ===== Macro Programming in ImageJ ===== | ||
+ | |||
+ | [[https:// | ||
+ | |||
+ | |||
+ | [[http:// | ||
+ | \\ | ||
+ | \\ | ||
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+ | Macro programming course primarily aims at making biologist' | ||
+ | |||
+ | * Why do we write macro? | ||
+ | * Basics | ||
+ | * Conditions and Loops | ||
+ | * Advanced Macro Programming | ||
+ | * File I/O | ||
+ | * Secondary Measurements | ||
+ | * Using Javascript | ||
+ | |||
+ | Click the text book image to download the textbook (ca. 1.6Mb, 126 pages). | ||
+ | |||
+ | To works with example images, install CMCI sample image loader plugin linked for downloadable [[http:// | ||
+ | |||
+ | If you want to contribute to the textbook, you could fork the textbook project from [[https:// | ||
+ | |||
+ | Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | ||
+ | |||
+ | https:// | ||
+ | ==== recent updates ==== | ||
+ | |||
+ | {{rss> | ||
+ | |||
+ | ==== syntax highlighter ==== | ||
+ | |||
+ | I recommend Fiji script editor for beginners to edit macro. But for those who prefer to use external editors, IJ macro syntax highlighter add-on for Vim, Notepad++(Windows) and CotEditor (OSX) are available at: | ||
+ | |||
+ | https:// | ||
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+ | With Vim, the script also allows auto-completion of commands. | ||
+ | ===== Misc ===== | ||
+ | Textbooks have been used for teaching in following countries: | ||
+ | |||
+ | * Germany | ||
+ | * Finland | ||
+ | * Italy | ||
+ | * Spain | ||
+ | * Sweden | ||
+ | * Singapore | ||
+ | * Belgium | ||
+ | * Greece | ||
+ | * Austria | ||
+ | * Switzerland | ||
+ | * Japan | ||
+ | |||
+ | |||
+ | |
documents/ijcourses.txt · Last modified: 2020/11/26 09:11 by 127.0.0.1