documents:ijcourses
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documents:ijcourses [2017/05/18 13:46] – [Basics of Image Processing and Analysis] kota | documents:ijcourses [2020/11/26 09:11] (current) – external edit 127.0.0.1 | ||
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- | <quote>In recent years, the focus in microscopy has changed from obtaining the correct image or sequence of images to the processing of said images. Therefore the field of image data analysis has become a crucial part of the experimental setup. So far the literature has not taken the image analyst into consideration, | + | <blockquote>In recent years, the focus in microscopy has changed from obtaining the correct image or sequence of images to the processing of said images. Therefore the field of image data analysis has become a crucial part of the experimental setup. So far the literature has not taken the image analyst into consideration, |
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===== Basics of Image Processing and Analysis ===== | ===== Basics of Image Processing and Analysis ===== | ||
- | [[https://github.com/cmci/ij_textbook1/ | + | [[https://zenodo.org/record/51511|{{ : |
- | [[http:// | + | [[http:// |
- | [[https:// | + | |
+ | [[https:// | ||
Basic course aims at biological researchers to learn basic knowledge and handling of image data using ImageJ. The textbook covers following topics: | Basic course aims at biological researchers to learn basic knowledge and handling of image data using ImageJ. The textbook covers following topics: | ||
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To works with example images, install CMCI sample image loader plugin downloadable [[http:// | To works with example images, install CMCI sample image loader plugin downloadable [[http:// | ||
- | If you want to contribute to the textbook, you could fork the textbook project from its [[https:// | + | If you want to contribute to the textbook, you could fork the textbook project from its [[https:// |
Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | ||
- | https:// | + | https:// |
==== update log ==== | ==== update log ==== | ||
- | {{rss> | + | {{rss> |
===== Macro Programming in ImageJ ===== | ===== Macro Programming in ImageJ ===== | ||
- | [[https://github.com/cmci/ij_textbook2/ | + | |
+ | [[https://zenodo.org/record/30267|{{ : | ||
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To works with example images, install CMCI sample image loader plugin linked for downloadable [[http:// | To works with example images, install CMCI sample image loader plugin linked for downloadable [[http:// | ||
- | If you want to contribute to the textbook, you could fork the textbook project from [[https:// | + | If you want to contribute to the textbook, you could fork the textbook project from [[https:// |
Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | Otherwise, if you find mistakes (I know there should be a lot), just post your suggestion as a "new issue" at | ||
- | https:// | + | https:// |
==== recent updates ==== | ==== recent updates ==== | ||
- | {{rss> | + | {{rss> |
==== syntax highlighter ==== | ==== syntax highlighter ==== | ||
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I recommend Fiji script editor for beginners to edit macro. But for those who prefer to use external editors, IJ macro syntax highlighter add-on for Vim, Notepad++(Windows) and CotEditor (OSX) are available at: | I recommend Fiji script editor for beginners to edit macro. But for those who prefer to use external editors, IJ macro syntax highlighter add-on for Vim, Notepad++(Windows) and CotEditor (OSX) are available at: | ||
- | https:// | + | https:// |
With Vim, the script also allows auto-completion of commands. | With Vim, the script also allows auto-completion of commands. |
documents/ijcourses.1495115189.txt.gz · Last modified: 2017/05/18 13:46 by kota