Bioimage Analysis Wiki

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====== Course Utilities ======

===== Author =====

Kota Miura\\ 
Centre for Molecular and Cellular Imaging (CMCI)\\
EMBL Heidelberg\\ 
miura at embl dot de\\ 
Tel: +49 6221 387 404

===== History =====
  * 12-05-30 First verison
  * 12-09-21 Added course module plugins, references

==== recent changes ====
{{rss>https://github.com/cmci/CourseUtil/commits/master.atom 10 date 48h}} 

===== Source =====

Released under the [[http://www.gnu.org/licenses/gpl-2.0.html|GNU General Public License v2]]. 

===== Requires =====

ImageJ ver 1.34j or higher ([[http://rsb.info.nih.gov/ij/upgrade/|ImageJ, upgrade page]]), or Fiji. 
===== Installation & Updating =====

There are two ways. 

  - Use Fiji Updater.
  - Manually download the plugin and install. 

==== Fiji Updater ====

[[http://fiji.sc/How_to_follow_a_3rd_party_update_site|Follow the instruction in Fiji Wiki]] to add "CMCI-EMBL" to your updater. The advantage of using this method over manual download & installation is that the plugin is automatically updated when I upgrade it in future. 

==== Manual Download ====

Download the plugin **EMBL_sampleimages-1.0.x.jar** from the latest release in the following page:

https://github.com/cmci/CourseUtil/releases/

and place it in the plugin folder of ImageJ (or Fiji). 


===== Description =====

This plugin adds a new menu "EMBL" in the menu bar

  * To load and open sample images used for image analysis courses. 
  * To use various functions for learning image processing algorithms. A collection of plugins available from the following sites:
    * [[http://svg.dmi.unict.it/iplab/imagej/index.htm|ImageJ Plugins by Prof. Sebastiano Battiato]]
    * [[http://fiji.sc|fiji site]]