mcib3d.geom

Class Object3D_IJUtils

java.lang.Object

mcib3d.geom.Object3D_IJUtils

public class Object3D_IJUtils
extends java.lang.Object

static methods to use with ImageJ for the Object3D class Created by thomasb on 16/11/16.

Constructor Summary

Constructors

Constructor and Description
Object3D_IJUtils()

Method Summary

Modifier and Type	Method and Description
static Object3DLabel	createObject3DLabel(ImagePlus plus, int val)
static Object3DLabel	createObject3DLabel(ImageStack plus, int val)
static Object3DVoxels	createObject3DVoxels(ImagePlus plus, int val)
static Object3DVoxels	createObject3DVoxels(ImageStack plus, int val)
static Roi	createRoi(Object3D object3D, int z)
static boolean	draw(Object3D object3D, ByteProcessor mask, int z, int col)
static void	draw(Object3D object3D, ImageStack mask, int col)
static void	draw(Object3D object3D, ImageStack mask, int r, int g, int b)
static void	drawIntersectionLabel(Object3DLabel object3DLabel, Object3DLabel other, ImageStack mask, int col)
static void	drawIntersectionLabel(Object3DLabel object3DLabel, Object3DLabel other, ImageStack mask, int red, int green, int blue)
static void	drawLabel(Object3D object3D, ImageStack mask, int col)
static void	drawLabel(Object3D object3D, ImageStack mask, int nbz, int r, int g, int b)
static ImagePlus	drawRandomColors(Objects3DPopulation objects3DPopulation, int sx, int sy, int sz)
static Calibration	getCalibration(Object3D object3D)
static void	setCalibration(Object3D object3D, Calibration cal)
static boolean	touchBorders(Object3D object3D, ImagePlus img, boolean Z)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Object3D_IJUtils

public Object3D_IJUtils()

Method Detail

getCalibration

public static Calibration getCalibration(Object3D object3D)

setCalibration

public static void setCalibration(Object3D object3D,
                                  Calibration cal)

touchBorders

public static boolean touchBorders(Object3D object3D,
                                   ImagePlus img,
                                   boolean Z)

createObject3DVoxels

public static Object3DVoxels createObject3DVoxels(ImagePlus plus,
                                                  int val)

createObject3DLabel

public static Object3DLabel createObject3DLabel(ImagePlus plus,
                                                int val)

createObject3DLabel

public static Object3DLabel createObject3DLabel(ImageStack plus,
                                                int val)

createObject3DVoxels

public static Object3DVoxels createObject3DVoxels(ImageStack plus,
                                                  int val)

createRoi

public static Roi createRoi(Object3D object3D,
                            int z)

drawRandomColors

public static ImagePlus drawRandomColors(Objects3DPopulation objects3DPopulation,
                                         int sx,
                                         int sy,
                                         int sz)

draw

public static boolean draw(Object3D object3D,
                           ByteProcessor mask,
                           int z,
                           int col)

draw

public static void draw(Object3D object3D,
                        ImageStack mask,
                        int col)

draw

public static void draw(Object3D object3D,
                        ImageStack mask,
                        int r,
                        int g,
                        int b)

drawLabel

public static void drawLabel(Object3D object3D,
                             ImageStack mask,
                             int col)

drawLabel

public static void drawLabel(Object3D object3D,
                             ImageStack mask,
                             int nbz,
                             int r,
                             int g,
                             int b)

drawIntersectionLabel

public static void drawIntersectionLabel(Object3DLabel object3DLabel,
                                         Object3DLabel other,
                                         ImageStack mask,
                                         int red,
                                         int green,
                                         int blue)

drawIntersectionLabel

public static void drawIntersectionLabel(Object3DLabel object3DLabel,
                                         Object3DLabel other,
                                         ImageStack mask,
                                         int col)