mcib3d.image3d.processing

Class MaximaFinder

java.lang.Object

mcib3d.image3d.processing.MaximaFinder

public class MaximaFinder
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
protected ImageHandler	imagePeaks The image with the final peaks
protected ImageHandler	img The raw image to analyze
protected java.util.ArrayList<Voxel3D>	maxima The list of peaks
protected int	nbCpus The number of cpus to use, 0 = all
protected float	noiseTolerance The noise tolerance around each peak
protected float	radXY The radius XY to find local maxima
protected float	radZ The radius Z to find local maxima
protected boolean	verbose Do we display information ?

Constructor Summary

Constructors

Constructor and Description
MaximaFinder(ImageHandler ima) Constructor with default values
MaximaFinder(ImageHandler ima, float noiseTolerance) Constructor with default values for radii
MaximaFinder(ImageHandler img, float radXY, float radZ, float noiseTolerance) Constructor

Method Summary

Modifier and Type	Method and Description
ImageHandler	getImagePeaks() Do the computation and returns the result
java.util.ArrayList<Voxel3D>	getListPeaks()
void	setImage(ImageHandler img) A new image to process
void	setNbCpus(int nbCpus) Number of Cpus
void	setNoiseTolerance(float noiseTolerance) The noise tolerance
void	setRadii(float rxy, float rz) The radii to compute local maxima
void	setShow(boolean show) Deprecated.
void	setVerbose(boolean show) Display information

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

img

protected ImageHandler img

The raw image to analyze

imagePeaks

protected ImageHandler imagePeaks

The image with the final peaks

noiseTolerance

protected float noiseTolerance

The noise tolerance around each peak

maxima

protected java.util.ArrayList<Voxel3D> maxima

The list of peaks

radXY

protected float radXY

The radius XY to find local maxima

radZ

protected float radZ

The radius Z to find local maxima

nbCpus

protected int nbCpus

The number of cpus to use, 0 = all

verbose

protected boolean verbose

Do we display information ?

Constructor Detail

MaximaFinder

public MaximaFinder(ImageHandler ima,
                    float noiseTolerance)

Constructor with default values for radii

Parameters:

ima - The raw image

noiseTolerance - The noise tolerance

MaximaFinder

public MaximaFinder(ImageHandler img,
                    float radXY,
                    float radZ,
                    float noiseTolerance)

Constructor

Parameters:

img - The raw image

radXY - The radius XY to find local maxima

radZ - The radius Z to find local maxima

noiseTolerance - The noise tolerance

MaximaFinder

public MaximaFinder(ImageHandler ima)

Constructor with default values

Parameters:

ima - The raw image

Method Detail

getImagePeaks

public ImageHandler getImagePeaks()

Do the computation and returns the result

Returns:

The image with peaks

getListPeaks

public java.util.ArrayList<Voxel3D> getListPeaks()

setImage

public void setImage(ImageHandler img)

A new image to process

Parameters:

img - The image

setNoiseTolerance

public void setNoiseTolerance(float noiseTolerance)

The noise tolerance

Parameters:

noiseTolerance - The noise tolerance

setRadii

public void setRadii(float rxy,
                     float rz)

The radii to compute local maxima

Parameters:

rxy - The radius XY to find local maxima

rz - The radius Z to find local maxima

setNbCpus

public void setNbCpus(int nbCpus)

Number of Cpus

Parameters:

nbCpus - Number of cpus

setVerbose

public void setVerbose(boolean show)

Display information

Parameters:

show - Display information

setShow

@Deprecated
public void setShow(boolean show)

Deprecated.