mcib3d.image3d.regionGrowing

Class Watershed3D_old

java.lang.Object

mcib3d.image3d.regionGrowing.Watershed3D_old

Direct Known Subclasses:

RegionGrowing

public class Watershed3D_old
extends java.lang.Object

Class for 3D watershed implementation, using seeds

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	computeAssociation
protected boolean	computeUpdatedLabels
protected boolean	computeVolumes

Constructor Summary

Constructors

Constructor and Description
Watershed3D_old(ImageHandler image, ImageHandler seeds, int noi, int seth)
Watershed3D_old(ImageStack image, ImageStack seeds, int noi, int seth) Constructor for 3D Watershed

Method Summary

Modifier and Type	Method and Description
ImageInt	continueWatershed3D(int threshold) Compute the watershed image as next iteration from previous watershed , only for voxels with value > threshold
ImageHandler	getNonLabelledVoxels(int threshold, boolean value)
ImageHandler	getRawImage() Get the raw image used
ImageHandler	getSeeds() Get the seeds image used
ImageInt	getWatershedImage3D() compute the watershed image
ImageInt	getWatershedImage3D(int threshold) compute the watershed image, only for voxels with value > threshold
ImageStack	getWatershedImageStack() compute the watershed image
ImageStack	getWatershedImageStack(int threshold) compute the watershed image
void	setFastButLessAccurate(boolean fastButLessAccurate)
void	setRawImage(ImageHandler image) Sets the raw image
void	setSeeds(ImageInt seeds) set the seeds iamge used
void	updateVolumeLabel(int idx, double vol)
void	updateWatershedImage3D(ImageInt wat)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

computeAssociation

protected boolean computeAssociation

computeUpdatedLabels

protected boolean computeUpdatedLabels

computeVolumes

protected boolean computeVolumes

Constructor Detail

Watershed3D_old

public Watershed3D_old(ImageHandler image,
                       ImageHandler seeds,
                       int noi,
                       int seth)

Parameters:

image - raw image

seeds - seeds image

noi - noise level for rw image

seth - noise level for seeds

Watershed3D_old

public Watershed3D_old(ImageStack image,
                       ImageStack seeds,
                       int noi,
                       int seth)

Constructor for 3D Watershed

Parameters:

image - raw image

seeds - seeds image

noi - noise level for rw image

seth - noise level for seeds

Method Detail

getWatershedImage3D

public ImageInt getWatershedImage3D(int threshold)

compute the watershed image, only for voxels with value > threshold

Parameters:

threshold -

Returns:

watershed image

getWatershedImage3D

public ImageInt getWatershedImage3D()

compute the watershed image

Returns:

watershed image

updateWatershedImage3D

public void updateWatershedImage3D(ImageInt wat)

setFastButLessAccurate

public void setFastButLessAccurate(boolean fastButLessAccurate)

updateVolumeLabel

public void updateVolumeLabel(int idx,
                              double vol)

continueWatershed3D

public ImageInt continueWatershed3D(int threshold)

Compute the watershed image as next iteration from previous watershed , only for voxels with value > threshold

Parameters:

threshold -

Returns:

getWatershedImageStack

public ImageStack getWatershedImageStack(int threshold)

compute the watershed image

Returns:

watershed image

getWatershedImageStack

public ImageStack getWatershedImageStack()

compute the watershed image

Returns:

watershed image

getRawImage

public ImageHandler getRawImage()

Get the raw image used

Returns:

raw image

setRawImage

public void setRawImage(ImageHandler image)

Sets the raw image

Parameters:

image -

getSeeds

public ImageHandler getSeeds()

Get the seeds image used

Returns:

seeds image

setSeeds

public void setSeeds(ImageInt seeds)

set the seeds iamge used

Parameters:

seeds - image

getNonLabelledVoxels

public ImageHandler getNonLabelledVoxels(int threshold,
                                         boolean value)