mcib_plugins.Filter3D

Class Filter3Ddefault

java.lang.Object

mcib_plugins.Filter3D.Filter3Ddefault

Direct Known Subclasses:

Filter3Dmax, Filter3DmaxLocal, Filter3Dmean, Filter3Dmin

public class Filter3Ddefault
extends java.lang.Object

default filter class walks through the image in 'snakewise' order and uses previous values for calculating the succeeding ones note: this was written for the mean filter and adapted for other filters a lot of code and comments have been kept to improve understanding the calculate_border_xx methods are very similar, they could have been combined but this would have made the code even more difficult to read rl vs rl use a different check against the borders rl vs tb vs fb 'walk' along different axes

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	Filter3Ddefault.Voxel_value

Field Summary

Fields

Modifier and Type	Field and Description
protected double	initial_value

Constructor Summary

Constructors

Constructor and Description
Filter3Ddefault(ImageStack in, ImageStack out, int r)

Method Summary

Modifier and Type	Method and Description
void	filter()
protected double	getVoxel(int i, int j, int k)
protected Filter3Ddefault.Voxel_value	iterate_and_add(int x, int y, int z, byte type)
protected Filter3Ddefault.Voxel_value	iterate_and_read(int[] in)
protected Filter3Ddefault.Voxel_value	iterate_and_subtract(int x, int y, int z, byte type)
protected double	post_process_voxel(double temp_value, double operand)
protected Filter3Ddefault.Voxel_value	process_next_voxel(int x, int y, int z, Filter3Ddefault.Voxel_value prev_voxel, byte type)
protected double	process_voxel(double temp_value, double operand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

initial_value

protected double initial_value

Constructor Detail

Filter3Ddefault

public Filter3Ddefault(ImageStack in,
                       ImageStack out,
                       int r)

Method Detail

filter

public void filter()

iterate_and_read

protected Filter3Ddefault.Voxel_value iterate_and_read(int[] in)

iterate_and_add

protected Filter3Ddefault.Voxel_value iterate_and_add(int x,
                                                      int y,
                                                      int z,
                                                      byte type)

iterate_and_subtract

protected Filter3Ddefault.Voxel_value iterate_and_subtract(int x,
                                                           int y,
                                                           int z,
                                                           byte type)

process_next_voxel

protected Filter3Ddefault.Voxel_value process_next_voxel(int x,
                                                         int y,
                                                         int z,
                                                         Filter3Ddefault.Voxel_value prev_voxel,
                                                         byte type)

process_voxel

protected double process_voxel(double temp_value,
                               double operand)

post_process_voxel

protected double post_process_voxel(double temp_value,
                                    double operand)

getVoxel

protected double getVoxel(int i,
                          int j,
                          int k)