Deprecated API

Contents

• Deprecated Classes
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Classes

Class and Description
mcib3d.image3d.distanceMap3d.CleanUpLocalThickness
mcib3d.image3d.legacy.ColorImage3D
mcib3d.image3d.distanceMap3d.DistanceRidge
mcib3d.image3d.legacy.FHTImage3D
mcib3d.image3d.legacy.Image3D
mcib3d.image3d.legacy.IntImage3D
mcib3d.image3d.distanceMap3d.LocalThickness
mcib3d.image3d.MaskIterator
mcib3d.geom.Object3DFactory
mcib3d.geom.Objects3DPopulationAnalysis
mcib3d.image3d.legacy.RealImage3D

Deprecated Fields

Field and Description
mcib3d.image3d.IterativeThresholding.TrackThreshold.status
mcib3d.image3d.IterativeThresholding.TrackThreshold.verbose

Deprecated Methods

Method and Description
mcib3d.image3d.ImageFloat.adaptiveFilter(float, float, float, int)
mcib3d.image3d.ImageInt.adaptiveFilter(float, float, float, int)
mcib3d.geom.Objects3DPopulation.addImage(ImageInt, Calibration)
mcib3d.geom.Objects3DPopulation.addImage(ImageInt, int, Calibration)
mcib3d.geom.Objects3DPopulation.addImage(ImagePlus)
mcib3d.geom.Object3DSurface.computeMeshSurface(boolean)
mcib3d.geom.Object3D.computeMeshSurface(boolean) use Object3D-IJUtils
mcib3d.geom.Object3DLabel.createRoi(int)
mcib3d.geom.Object3DVoxels.createRoi(int) use Object3D-IJUtils Constructor for the createRoi object
mcib3d.geom.Object3DSurface.createRoi(int)
mcib3d.geom.Object3D.createRoi(int) use Object3D-IJUtils create a roi for a slice
mcib3d.geom.Object3DLabel.draw(ByteProcessor, int, int)
mcib3d.geom.Object3DVoxels.draw(ByteProcessor, int, int) use Object3D-IJUtils Draw inside a particular Z
mcib3d.geom.Object3DSurface.draw(ByteProcessor, int, int)
mcib3d.geom.Object3D.draw(ByteProcessor, int, int) use Object3D-IJUtils drawing inside a 2D byteprocessor
mcib3d.geom.Object3DLabel.draw(ImageStack, int)
mcib3d.geom.Object3DVoxels.draw(ImageStack, int) use Object3D-IJUtils
mcib3d.geom.Object3DSurface.draw(ImageStack, int)
mcib3d.geom.Object3D.draw(ImageStack, int) use Object3D-IJUtils drawing inside an imagestack
mcib3d.geom.Object3DLabel.draw(ImageStack, int, int, int)
mcib3d.geom.Object3DVoxels.draw(ImageStack, int, int, int) use Object3D-IJUtils
mcib3d.geom.Object3DSurface.draw(ImageStack, int, int, int)
mcib3d.geom.Object3D.draw(ImageStack, int, int, int) use Object3D-IJUtils drawing inside an imagestack, in rgb color
mcib3d.geom.Object3DLabel.drawIntersection(ImageStack, Object3DLabel, int)
mcib3d.geom.Object3DLabel.drawIntersection(ImageStack, Object3DLabel, int, int, int)
mcib3d.geom.Object3D.getCalibration() use Object3D-IJUtils Gets the calibration of the Object3D (ImageJ)
mcib3d.geom.Objects3DPopulation.getCalibration()
mcib3d.image3d.ImageHandler.getCalibration()
mcib3d.image3d.ImageHandler.getHistogram(ArrayList<? extends Point3D>, int, double, double)
mcib3d.geom.interactions.InteractionsList.getMap()
mcib3d.geom.Objects3DPopulation.getMeasuresMesh()
mcib3d.image3d.ImageHandler.getMinAndMaxArray(ArrayList<? extends Point3D>)
mcib3d.image3d.ImageHandler.getNeighborhood3x3x3ListCenter(int, int, int)
mcib3d.image3d.ImageHandler.getNeighborhood3x3x3ListNoCenter(int, int, int)
mcib3d.image3d.ImageHandler.getNeighborhoodCross3DList(int, int, int, boolean)
mcib3d.image3d.ImageHandler.getNeighborhoodLayerList(int, int, int, float, float)
mcib3d.image3d.ImageHandler.getNeighborhoodLayerList(int, int, int, float, float, ImageInt)
mcib3d.image3d.ImageInt.getObjects3D(ImageFloat, float)
mcib3d.image3d.ImageFloat.getPixel(int)
mcib3d.image3d.ImageByte.getPixel(int)
mcib3d.image3d.ImageShort.getPixel(int)
mcib3d.image3d.ImageHandler.getPixel(int)
mcib3d.image3d.ImageByte.getPixelInt(int)
mcib3d.image3d.ImageShort.getPixelInt(int)
mcib3d.image3d.ImageInt.getPixelInt(int)
mcib3d.geom.Object3DVoxels.getRandomvoxel(Random)
mcib3d.utils.ArrayUtil.getSize() see size() get the number of elements
mcib3d.image3d.ImageFloat.intersectMask(ImageFloat)
mcib3d.image3d.ImageFloat.intersectMask(ImageInt)
mcib3d.image3d.ImageByte.intersectMask(ImageInt)
mcib3d.image3d.ImageShort.intersectMask(ImageInt)
mcib3d.image3d.ImageHandler.intersectMask(ImageInt)
mcib3d.image3d.distanceMap3d.EDT.localThickness(ImageHandler, ImageInt, float, boolean, int)
mcib3d.image3d.distanceMap3d.EDT.localThickness(ImageHandler, ImageInt, float, float, float, boolean, int)
mcib3d.geom.Objects3DPopulationAnalysis.orderedDistancesBorderObjects(Object3D)
mcib3d.image3d.ImageHandler.sameDimentions(ImageHandler)
mcib3d.image3d.ImageHandler.sameDimentions(ImagePlus)
mcib3d.geom.Object3D.setCalibration(Calibration) use Object3D-IJUtils Sets the calibration of the Object3D (ImageJ)
mcib3d.geom.Objects3DPopulation.setCalibration(Calibration)
mcib3d.image3d.ImageHandler.setCalibration(Calibration)
mcib3d.image3d.Segment3DSpots.setNoiseWatershed(int)
mcib3d.image3d.ImageFloat.setPixel(int, float)
mcib3d.image3d.ImageByte.setPixel(int, float)
mcib3d.image3d.ImageShort.setPixel(int, float)
mcib3d.image3d.ImageHandler.setPixel(int, float)
mcib3d.image3d.processing.MaximaFinder.setShow(boolean)
mcib3d.image3d.IterativeThresholding.TrackThreshold.setVerbose(boolean)
mcib3d.image3d.ImageHandler.substractImage(ImageHandler)
mcib3d.image3d.ImageInt.substractImage(ImageInt)
mcib3d.geom.Object3D.touchBorders(ImagePlus, boolean) use Object3D-IJUtils

Deprecated Constructors

Constructor and Description
mcib3d.geom.Object3DLabel(ImagePlus, int)
mcib3d.geom.Object3DVoxels(ImagePlus, int) use Object3D-IJUtils Constructor for the Object3D object
mcib3d.geom.Object3DVoxels(ImageStack, int) use Object3D-IJUtils Constructor for the Object3D object
mcib3d.geom.Objects3DPopulation(ImagePlus)
mcib3d.geom.Objects3DPopulation(Object3D[], Calibration)