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--- shared:bias2013:assignments [2013/05/16 14:48] – [module 4] kota
+++ shared:bias2013:assignments [2016/05/24 12:46] – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
+====== Assignments ======
+===== module 1 and 2 =====
+==== 1. Quantum dot counting (planned, but omitted)====
+sample image: quantumdots.tif
+design a protocol for segmenting quantum dot and write a macro that counts the number of quantum dots in the image.
+==== 2. Modify dot movement macro as you like. ====
+(Brownian, Cycloid, Sinusoidal …)
+Save your macro in the data server.
+Please do not forget to include your names in the macro file name.
+**Answers**
+  * XY movement
+    * see https://gist.github.com/cmci/24a6d91c7358454cb444
+  * Random Walk
+    * see  https://gist.github.com/cmci/3e1b8bcd73ea864b46ee
+    * The function used in this macro could be tested with the following code
+      * https://gist.github.com/cmci/5592101
+===== module 4 =====
+==== Relative Movement ====
+Go to section 4.4.7 and do the exercise 4.4.7-1.
+==== PIV based anaysis (omitted) ====
+Try install and using the following plugin:
+https://sites.google.com/site/qingzongtseng/piv
+Get a vector field data (you need only two frames for this), save the results as a csv file and then analyze the directioanlity in R.