mcib3d.geom.interactions

Class InteractionsList

java.lang.Object

mcib3d.geom.interactions.InteractionsList

public class InteractionsList
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
InteractionsList()

Method Summary

Modifier and Type	Method and Description
boolean	addInteraction(Object3DInt object3D1, Object3DInt object3D2)
boolean	addInteraction(Object3DInt object3D1, Object3DInt object3D2, int volume)
boolean	addInteraction(PairObjects3DInt pair)
boolean	contains(java.lang.String inter)
boolean	containsFloat(float a, float b)
boolean	containsInt(int a, int b)
java.util.HashMap<java.lang.String,PairObjects3DInt>	getMap() Deprecated.
java.util.List<PairObjects3DInt>	getObject1ColocalisationPairs(Object3DInt object3D)
java.util.List<PairObjects3DInt>	getObject1ColocalisationPairs(Object3DInt object3D, boolean ascending)
java.util.List<PairObjects3DInt>	getObject2ColocalisationPairs(Object3DInt object3D)
PairObjects3DInt	getPair(float a, float b)
Objects3DIntPopulation	getPopulation()
ResultsTable	getResultsTableOnlyColoc()
double	incrementPairVolume(float a, float b)
double	incrementPairVolume(float a, float b, int vol)
double	incrementPairVolume(int a, int b) Deprecated.
double	incrementPairVolume(int a, int b, int vol) Deprecated.
void	setPopulation(Objects3DIntPopulation population)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

InteractionsList

public InteractionsList()

Method Detail

getPopulation

public Objects3DIntPopulation getPopulation()

setPopulation

public void setPopulation(Objects3DIntPopulation population)

contains

public boolean contains(java.lang.String inter)

containsInt

public boolean containsInt(int a,
                           int b)

containsFloat

public boolean containsFloat(float a,
                             float b)

addInteraction

public boolean addInteraction(PairObjects3DInt pair)

addInteraction

public boolean addInteraction(Object3DInt object3D1,
                              Object3DInt object3D2)

addInteraction

public boolean addInteraction(Object3DInt object3D1,
                              Object3DInt object3D2,
                              int volume)

incrementPairVolume

@Deprecated
public double incrementPairVolume(int a,
                                              int b)

Deprecated.

incrementPairVolume

public double incrementPairVolume(float a,
                                  float b)

incrementPairVolume

@Deprecated
public double incrementPairVolume(int a,
                                              int b,
                                              int vol)

Deprecated.

incrementPairVolume

public double incrementPairVolume(float a,
                                  float b,
                                  int vol)

getPair

public PairObjects3DInt getPair(float a,
                                float b)

getMap

@Deprecated
public java.util.HashMap<java.lang.String,PairObjects3DInt> getMap()

Deprecated.

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getResultsTableOnlyColoc

public ResultsTable getResultsTableOnlyColoc()

getObject1ColocalisationPairs

public java.util.List<PairObjects3DInt> getObject1ColocalisationPairs(Object3DInt object3D)

getObject1ColocalisationPairs

public java.util.List<PairObjects3DInt> getObject1ColocalisationPairs(Object3DInt object3D,
                                                                      boolean ascending)

getObject2ColocalisationPairs

public java.util.List<PairObjects3DInt> getObject2ColocalisationPairs(Object3DInt object3D)