mcib3d.image3d

Class ImageLabeller

java.lang.Object

mcib3d.image3d.ImageLabeller

public class ImageLabeller
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	ImageLabeller.Spot3D
protected class	ImageLabeller.Vox3D

Field Summary

Fields

Modifier and Type	Field and Description
protected ImageHandler	currentMask
protected java.util.Map<java.lang.Integer,ImageLabeller.Spot3D>	listSpots

Constructor Summary

Constructors

Constructor and Description
ImageLabeller()
ImageLabeller(boolean debug)
ImageLabeller(double min, double max)

Method Summary

Modifier and Type	Method and Description
ImageInt	getLabels(ImageHandler mask)
ImageInt	getLabels(ImageHandler mask, boolean connex6)
ImageFloat	getLabelsFloat(ImageHandler mask)
ImageFloat	getLabelsFloat(ImageHandler mask, boolean connex6)
ImageInt	getLabelsIndividualVoxels(ImageHandler mask)
ImageFloat	getLabelsIndividualVoxelsFloat(ImageHandler mask)
double	getMaxsize()
double	getMinSize()
int	getNbObjectsinSizeRange(ImageHandler mask) Deprecated.
int	getNbObjectsInSizeRange(ImageHandler mask)
int	getNbObjectsinSizeRange(ImageHandler mask, boolean connex6) Deprecated.
int	getNbObjectsInSizeRange(ImageHandler mask, boolean connex6)
int	getNbObjectsTotal(ImageHandler mask)
int	getNbObjectsTotal(ImageHandler mask, boolean connex6)
java.util.List<Object3DVoxels>	getObjects(ImageHandler mask) Deprecated.
java.util.List<Object3DVoxels>	getObjects(ImageHandler mask, boolean connex6) Deprecated.
java.util.List<Object3DInt>	getObjects3D(ImageHandler mask)
java.util.List<Object3DInt>	getObjects3D(ImageHandler mask, boolean connex6)
void	setMaxsize(int maxsize)
void	setMinSize(int minSize)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

listSpots

protected java.util.Map<java.lang.Integer,ImageLabeller.Spot3D> listSpots

currentMask

protected ImageHandler currentMask

Constructor Detail

ImageLabeller

public ImageLabeller(boolean debug)

ImageLabeller

public ImageLabeller()

ImageLabeller

public ImageLabeller(double min,
                     double max)

Method Detail

getMinSize

public double getMinSize()

setMinSize

public void setMinSize(int minSize)

getMaxsize

public double getMaxsize()

setMaxsize

public void setMaxsize(int maxsize)

getLabels

public ImageInt getLabels(ImageHandler mask,
                          boolean connex6)

getLabelsFloat

public ImageFloat getLabelsFloat(ImageHandler mask)

getLabelsFloat

public ImageFloat getLabelsFloat(ImageHandler mask,
                                 boolean connex6)

getLabels

public ImageInt getLabels(ImageHandler mask)

getNbObjectsTotal

public int getNbObjectsTotal(ImageHandler mask,
                             boolean connex6)

getLabelsIndividualVoxels

public ImageInt getLabelsIndividualVoxels(ImageHandler mask)

getLabelsIndividualVoxelsFloat

public ImageFloat getLabelsIndividualVoxelsFloat(ImageHandler mask)

getNbObjectsTotal

public int getNbObjectsTotal(ImageHandler mask)

getNbObjectsInSizeRange

public int getNbObjectsInSizeRange(ImageHandler mask,
                                   boolean connex6)

getNbObjectsinSizeRange

@Deprecated
public int getNbObjectsinSizeRange(ImageHandler mask,
                                               boolean connex6)

Deprecated.

getNbObjectsInSizeRange

public int getNbObjectsInSizeRange(ImageHandler mask)

getNbObjectsinSizeRange

@Deprecated
public int getNbObjectsinSizeRange(ImageHandler mask)

Deprecated.

getObjects3D

public java.util.List<Object3DInt> getObjects3D(ImageHandler mask,
                                                boolean connex6)

getObjects3D

public java.util.List<Object3DInt> getObjects3D(ImageHandler mask)

getObjects

@Deprecated
public java.util.List<Object3DVoxels> getObjects(ImageHandler mask,
                                                             boolean connex6)

Deprecated.

getObjects

@Deprecated
public java.util.List<Object3DVoxels> getObjects(ImageHandler mask)

Deprecated.