mcib3d.image3d.distanceMap3d

Class EDT

java.lang.Object

mcib3d.image3d.distanceMap3d.EDT

public class EDT
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
EDT()

Method Summary

Modifier and Type	Method and Description
static ImageFloat	localThickness(ImageHandler in, ImageInt mask, float thld, boolean inside, int nbCPUs) Deprecated.
static ImageFloat	localThickness(ImageHandler in, ImageInt mask, float thld, float radiusXY, float radiusZ, boolean inside, int nbCPUs) Deprecated.
static ImageHandler	normaliseLabel(ImageInt labels, ImageFloat edt)
static void	normalizeDistanceMap(ImageFloat distanceMap, ImageHandler mask, boolean excludeZeros)
static void	normalizeDistanceMap(ImageFloat distanceMap, ImageInt mask)
static void	normalizeDistanceMap(ImageFloat distanceMap, ImageInt mask, boolean excludeZeros)
static void	normalizeDistanceMapLegacy(ImageFloat distanceMap, ImageHandler mask, boolean excludeZeros)
static ImageFloat	run_includeInside(ImageHandler ip, int thresh, boolean absolute, int nbCPUs)
static ImageFloat	run_includeInside(ImageHandler ip, int thresh, float scaleXY, float scaleZ, boolean absolute, int nbCPUs)
static ImageFloat	run(ImageHandler ip, float thresh, boolean inverse, int nbCPUs)
static ImageFloat	run(ImageHandler ip, float thresh, float scaleXY, float scaleZ, boolean inverse, int nbCPUs)
static ImageFloat	runEdtLabel(ImageInt objects, float scaleXY, float scaleZ, int nbCPUs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EDT

public EDT()

Method Detail

run

public static ImageFloat run(ImageHandler ip,
                             float thresh,
                             float scaleXY,
                             float scaleZ,
                             boolean inverse,
                             int nbCPUs)

Parameters:

ip - 8-bit or 16-bit image

thresh -

inverse -

scaleXY -

scaleZ -

nbCPUs -

Returns:

Throws:

java.lang.Exception

run

public static ImageFloat run(ImageHandler ip,
                             float thresh,
                             boolean inverse,
                             int nbCPUs)

run_includeInside

public static ImageFloat run_includeInside(ImageHandler ip,
                                           int thresh,
                                           float scaleXY,
                                           float scaleZ,
                                           boolean absolute,
                                           int nbCPUs)

run_includeInside

public static ImageFloat run_includeInside(ImageHandler ip,
                                           int thresh,
                                           boolean absolute,
                                           int nbCPUs)

localThickness

@Deprecated
public static ImageFloat localThickness(ImageHandler in,
                                                    ImageInt mask,
                                                    float thld,
                                                    float radiusXY,
                                                    float radiusZ,
                                                    boolean inside,
                                                    int nbCPUs)

Deprecated.

localThickness

@Deprecated
public static ImageFloat localThickness(ImageHandler in,
                                                    ImageInt mask,
                                                    float thld,
                                                    boolean inside,
                                                    int nbCPUs)

Deprecated.

runEdtLabel

public static ImageFloat runEdtLabel(ImageInt objects,
                                     float scaleXY,
                                     float scaleZ,
                                     int nbCPUs)

Parameters:

objects - : 16-bit object label image

scaleXY -

scaleZ -

Returns:

normalizeDistanceMap

public static void normalizeDistanceMap(ImageFloat distanceMap,
                                        ImageInt mask)

normalizeDistanceMap

public static void normalizeDistanceMap(ImageFloat distanceMap,
                                        ImageInt mask,
                                        boolean excludeZeros)

normalizeDistanceMapLegacy

public static void normalizeDistanceMapLegacy(ImageFloat distanceMap,
                                              ImageHandler mask,
                                              boolean excludeZeros)

normalizeDistanceMap

public static void normalizeDistanceMap(ImageFloat distanceMap,
                                        ImageHandler mask,
                                        boolean excludeZeros)

normaliseLabel

public static ImageHandler normaliseLabel(ImageInt labels,
                                          ImageFloat edt)