mcib3d.image3d.segment

Class Segment3DSpots

java.lang.Object

mcib3d.image3d.segment.Segment3DSpots

public class Segment3DSpots
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
boolean	bigLabel
boolean	useWatershed

Constructor Summary

Constructors

Constructor and Description
Segment3DSpots(ImageHandler image, ImageHandler seeds)

Method Summary

Modifier and Type	Method and Description
ImageHandler	getInternalLabelImage()
ImageHandler	getLabeledImage()
int	getNbObjects()
java.util.List<Object3DInt>	getObjects()
ImageHandler	getRawImage()
ImageHandler	getSeeds()
int	getSeedsThreshold()
int	getVolumeMax()
int	getVolumeMin()
void	segmentAll()
void	setBigLabel(boolean bigLabel)
void	setLocalThresholder(LocalThresholder localThresholder)
void	setRawImage(ImageHandler image)
void	setSeeds(ImageInt seeds)
void	setSeedsThreshold(int globalThreshold)
void	setSpotSegmenter(SpotSegmenter spotSegmenter)
void	setUseWatershed(boolean useWatershed)
void	setVolumeMax(int volMax)
void	setVolumeMin(int volMin)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bigLabel

public boolean bigLabel

useWatershed

public boolean useWatershed

Constructor Detail

Segment3DSpots

public Segment3DSpots(ImageHandler image,
                      ImageHandler seeds)

Parameters:

image - raw image

seeds - seeds image

Method Detail

setLocalThresholder

public void setLocalThresholder(LocalThresholder localThresholder)

setSpotSegmenter

public void setSpotSegmenter(SpotSegmenter spotSegmenter)

getSeedsThreshold

public int getSeedsThreshold()

Returns:

global threshold

setSeedsThreshold

public void setSeedsThreshold(int globalThreshold)

Parameters:

globalThreshold -

getRawImage

public ImageHandler getRawImage()

Returns:

raw image

setRawImage

public void setRawImage(ImageHandler image)

Parameters:

image -

getSeeds

public ImageHandler getSeeds()

Returns:

seeds image

setSeeds

public void setSeeds(ImageInt seeds)

Parameters:

seeds - image

getObjects

public java.util.List<Object3DInt> getObjects()

Returns:

getNbObjects

public int getNbObjects()

getInternalLabelImage

public ImageHandler getInternalLabelImage()

Returns:

setBigLabel

public void setBigLabel(boolean bigLabel)

setUseWatershed

public void setUseWatershed(boolean useWatershed)

getLabeledImage

public ImageHandler getLabeledImage()

segmentAll

public void segmentAll()

getVolumeMax

public int getVolumeMax()

Returns:

setVolumeMax

public void setVolumeMax(int volMax)

Parameters:

volMax -

getVolumeMin

public int getVolumeMin()

Returns:

setVolumeMin

public void setVolumeMin(int volMin)

Parameters:

volMin -