mcib3d.geom

Class Objects3DPopulationColocalisation

java.lang.Object

mcib3d.geom.Objects3DPopulationColocalisation

public class Objects3DPopulationColocalisation
extends java.lang.Object

Public class to compute (fast) co-localisation between two images

Constructor Summary

Constructors

Constructor and Description
Objects3DPopulationColocalisation(Objects3DPopulation population1, Objects3DPopulation population2) Constructor with two populations of objects

Method Summary

Modifier and Type	Method and Description
java.util.ArrayList<PairColocalisation>	getAllColocalisationPairs() Returns all the colocalisations
int	getColocObject(Object3D object3D1, Object3D object3D2) Return the colocalisation between two objects
int	getColocRaw(int i1, int i2) Return the colocalisation between two indices (not necessarily objects values)
java.util.ArrayList<PairColocalisation>	getObject1ColocalisationPairs(Object3D object3D) Returns all the colocalisations for one specific object in population 1
java.util.ArrayList<PairColocalisation>	getObject2ColocalisationPairs(Object3D object3D) Returns all the colocalisations for one specific object in population 2
ResultsTable	getResultsTableAll(boolean useValueObject) get the results of colocalisation as an ImageJ Results Table
ResultsTable	getResultsTableOnlyColoc(boolean useValueObject)
void	resetColocalisation() Reset the colocalisation In case some information changed in the populations

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Objects3DPopulationColocalisation

public Objects3DPopulationColocalisation(Objects3DPopulation population1,
                                         Objects3DPopulation population2)

Constructor with two populations of objects

Parameters:

population1 -

population2 -

Method Detail

getResultsTableAll

public ResultsTable getResultsTableAll(boolean useValueObject)

get the results of colocalisation as an ImageJ Results Table

Parameters:

useValueObject - use the original value of objects else use incremental values

Returns:

the Results Table

getResultsTableOnlyColoc

public ResultsTable getResultsTableOnlyColoc(boolean useValueObject)

getColocRaw

public int getColocRaw(int i1,
                       int i2)

Return the colocalisation between two indices (not necessarily objects values)

Parameters:

i1 - index of first object in population 1

i2 - index of second object in population 2

Returns:

the colocalisation volume (intersection) between the two objects

getColocObject

public int getColocObject(Object3D object3D1,
                          Object3D object3D2)

Return the colocalisation between two objects

Parameters:

object3D1 - The object in population 1

object3D2 - The object in population 2

Returns:

the colocalisation volume (intersection) between the two objects

getAllColocalisationPairs

public java.util.ArrayList<PairColocalisation> getAllColocalisationPairs()

Returns all the colocalisations

Returns:

List of colocalisation as PairColocalisation

getObject1ColocalisationPairs

public java.util.ArrayList<PairColocalisation> getObject1ColocalisationPairs(Object3D object3D)

Returns all the colocalisations for one specific object in population 1

Parameters:

object3D - The objet in population 1

Returns:

List of colocalisation as PairColocalisation

getObject2ColocalisationPairs

public java.util.ArrayList<PairColocalisation> getObject2ColocalisationPairs(Object3D object3D)

Returns all the colocalisations for one specific object in population 2

Parameters:

object3D - The objet in population 2

Returns:

List of colocalisation as PairColocalisation

resetColocalisation

public void resetColocalisation()

Reset the colocalisation In case some information changed in the populations