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RT @KuglerElisabeth: One question I often get is "How do I assess my segmentation?" Together with Andrik Bin Rampun, .@Timchico, and Paul…
About 4 hours, 7 mins ago by: Kota Miura (@cmci_)

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RT @clairebrown514: @cmci_ We use https://t.co/J9y0625zRl . People still need to be convinced and reminded to put the #RRID in the acknowled…
About 5 hours, 6 mins ago by: Kota Miura (@cmci_)

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RT @Coronin: Wonderful historical perspective from Tom Pollard: Landmarks in the discovery of a role for actin in cell locomotion https://t…
About 13 hours, 43 mins ago by: Kota Miura (@cmci_)

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RT @IAMichaelNelson: @cmci_ @CCI_liv I recommended to my old core https://t.co/mOai5Zez5b . A "how to use our core facility" protocol and ma…
About 19 hours, 6 mins ago by: Kota Miura (@cmci_)

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RT @cmci_: @CCI_liv It’s an idea. What would you say? There are journals that allows versioning, so it can be updated every time when there…
About 19 hours, 24 mins ago by: Kota Miura (@cmci_)

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@CCI_liv It’s an idea. What would you say? There are journals that allows versioning, so it can be updated every ti… https://t.co/xz3xKR243j
About 19 hours, 33 mins ago by: Kota Miura (@cmci_)
documents:120618fijijythonineclipse

Using Fiji Jython interpreter in Eclipse

Fiji has jython interpreter that allows you to do processing and analysis interactively via console. In case of using it from command line, following command launches the interactive interpreter as it is described in the Fiji website.

./ImageJ --jython

When you are developing a Fiji plugin using Eclipse, you might want to use this interactive functionality from within Eclipse. This could be done by configuring “External tools” as below. If you want to use other scripting language, you could replace the argument to –js, –jruby and so on.

documents/120618fijijythonineclipse.txt · Last modified: 2016/05/24 12:46 (external edit)